Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001676635.1_202016-06-25] 15,584 sequences; 24,384,713 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq41 197 4e-45 seq957 170 6e-37 seq17 149 2e-30 seq93 145 2e-29 seq29 89.7 2e-12 >seq41 Length=73621 Score = 197 bits (218), Expect = 4e-45 Identities = 589/901 (65%), Gaps = 7/901 (1%) Strand=Plus/Plus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 || || || |||||| | |||||||| || || ||||| || || ||||||||||| ||| Sbjct 58271 GCCATCGGTATCGATCTTGGTACTACCTACTCCTGTGTCGCCGTCTGGCAAAATGACCGT 58330 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || || | ||||| || ||||| |||||| | || || || ||||| || || || || Sbjct 58331 GTCGAGGTCATTGCCAACGATCAGGGTAACCGCACCACCCCCTCATATGTCGCCTTCACT 58390 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || | |||||| | || || ||| |||| || || || | || ||||| | || Sbjct 58391 GACTCGGAGCGTCTCATCGGAGATGCTGCCAAGAACCAGGTCGCCATGAATCCTCATAAC 58450 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGACAAATCTACACAATC 349437 || || || ||||||||||| |||||||| | ||||| | ||| || || Sbjct 58451 ACTGTCTTCGATGCTAAGCGTCTTATTGGCCGCAAGTTCGAC-GACCCCGAGGTTCAGTC 58509 Query 349438 TGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGA 349497 || | || || | ||||| || || ||| | ||| | || || || Sbjct 58510 CGACATGAAGCACTGGCCTTTCGAGGTCGT--CAACAC-CGGCGGCAAGCCCCAGATCCG 58566 Query 349498 GGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTT 349557 | || || || ||||| | || || |||||||| || || || |||||| | Sbjct 58567 CATCGAGTACAAGGGTGAGAAGAAGACCTTCACCCCCGAAGAGATCTCTTCCATGGTTCT 58626 Query 349558 AGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTAT 349617 | || ||| || | || || || || | |||| || || | ||||| || | Sbjct 58627 CCTCAAGATGCGTGAGACCGCCGAGGCCTACCTCGGTGGCACCGTCAAGGATGCCGTCGT 58686 Query 349618 TACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCAT 349677 || || || || || || || ||| | |||||| || || || ||||| || | ||| Sbjct 58687 CACCGTCCCCGCTTACTTCAACGATTCTCAGCGTCAGGCTACCAAGGATGCCGGTATCAT 58746 Query 349678 TGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGG 349737 | |||| | || ||| | | || || || || ||||||||||| || || || || || Sbjct 58747 TTCGGGTCTCAACGTTATGCGTATCATCAACGAGCCCACTGCTGCCGCCATCGCTTACGG 58806 Query 349738 GCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTAC 349797 || || || | | || ||||| || | || || || ||| | || || ||||| Sbjct 58807 TCTCGACAAGAAGGCCGAGGGCGAAAAGAACGTCCTCATCTTCGATCTCGGAGGAGGTAC 58866 Query 349798 TTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGG 349857 || ||||| || || || ||| | || ||||| || || || || || || || ||||| Sbjct 58867 CTTCGATGTTTCGCTCCTTACAATCGAGGAGGGTATCTTCGAGGTCAAGGCCACCGCTGG 58926 Query 349858 TGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGA 349917 ||| || || ||||| || || || || || || || ||||| || ||||| | || Sbjct 58927 TGACACCCACCTTGGCGGTGAGGACTTCGACAACCGCCTCGTCAACCACTTTGTCCAGGA 58986 Query 349918 ATTTAAGCGTCAAGCTAAAATTGATATTGGAGA-TAATCCTAGAGCAATGCGTCGCCTAA 349976 || ||||| |||| || | ||| | || || | || | ||||| || Sbjct 58987 GTTCAAGCG-CAAGAACAAGAAGGACTTGACCACCAACGCTCGTGCTCTCCGTCGTCTCC 59045 Query 349977 GAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAA 350036 | || || ||||| ||||||||||| | | || || || |||| ||| | || || | Sbjct 59046 GCACCGCCTGTGAGCGTGCTAAGCGCACTCTCTCTTCGGCTGCCCAGACCACCATCGAGA 59105 Query 350037 TTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAG 350096 | || || || || || | || |||| | || || || ||||| || || || | Sbjct 59106 TCGACTCGCTCTTCGAGGGTATCGACTTCTACACCTCCATCACCCGTGCCCGTTTCGAGG 59165 Query 350097 A 350097 | Sbjct 59166 A 59166 >seq957 Length=1833 Score = 170 bits (188), Expect = 6e-37 Identities = 178/234 (76%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 140504 TTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATA 140563 ||| | ||| ||||| | | | |||||| ||||||||| ||| || |||||||| || Sbjct 199 TTAGAGACCGCCACGAAGACGCAAAACAAGGTGAAGAGTACTCTCCTTCTGAATATTGTA 258 Query 140564 ATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATC 140623 |||||| | ||||| ||||| || | ||||| |||||||| || | || ||||| || Sbjct 259 ATCAGACAGAGTTCGTCCATCCTCCAACTGTTTACCAGCAAAAATCAATCGCTGCTGGTC 318 Query 140624 AGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG 140683 ||||||||| ||||| || |||||||| || || || ||||| ||||||| || || | Sbjct 319 AGGAGGAATACCTTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATCGTGTCCGAAGA 378 Query 140684 TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| ||||| | || | |||||||| || || || || ||||| |||||||| Sbjct 379 TTCGACTTCCAAAGTGATGGTCTTTCCTGTGAGCGTCTTGACAAAGATCTGCAT 432 Score = 165 bits (182), Expect = 2e-35 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || |||| ||||| ||||| | || || || ||||| || || ||||| Sbjct 430 CATACCACCTCGCAATCGCAGAACGAGATGCAACGTGGATTCCTTTTGGATGTTGTAATC 489 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| || ||||| || || |||||||||||||| || || ||||| ||||| Sbjct 490 CGAGAGGGTTCGGCCGTCTTCGAGCTGCTTTCCAGCAAAGATAAGGCGCTGCTGGTCAGG 549 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| ||||| |||||||| || || || || ||||| || || | || || | || Sbjct 550 GGGAATGCCTTCCTTATCCTGGATCTTGGCCTTAACATTGTCGATAGTGTCCGAGGACTC 609 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || |||| ||||| ||||| | || || ||||| |||||||| Sbjct 610 GACTTCGAGAGTAATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 660 Score = 141 bits (156), Expect = 3e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| || || || || ||||| || || || || || || Sbjct 658 CATACCACCACGGAGACGGAGAACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTC 717 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| ||||| ||||| || ||||| || || || ||||| |||||||| || Sbjct 718 CGAAAGGGTTCGTCCATCCTCAAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCGGG 777 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || |||||||| || || || || || || || | || || | || Sbjct 778 AGGAATACCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTC 837 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| ||||| || || ||||| || |||||||| Sbjct 838 CACCTCGAGGGTGATGGTCTTACCGGTCAGAGTCTTTACGAAGATCTGCAT 888 >seq17 Length=97802 Score = 149 bits (164), Expect = 2e-30 Identities = 174/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | |||||||| || ||||| |||||||| || || || | Sbjct 47461 TTTGCATACCACCACGGAGGCGGAGAACAAGGTGGAGAGTGGACTCTTTCTGGATGTTGT 47402 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || ||||| || || || || ||||| ||||| || || ||||||| Sbjct 47401 AGTCCGAGAGAGTGCGGCCATCCTCGAGCTGCTTACCAGCGAAGATGAGTCGCTGCTGAT 47342 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||| || || ||||| || ||||| || || || || || || ||||| | || || | Sbjct 47341 CAGGTGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGG 47282 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || | ||||| ||||| || || || ||||| |||||||| Sbjct 47281 ACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 47227 Score = 136 bits (150), Expect = 1e-26 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||| ||||| | | || |||||||| | || ||||| || ||||| || || || || Sbjct 47682 ACCGCCACGAAGACGGAGGACAAGATGCAAGGTGGACTCCTTCTGAATGTTGTAGTCGGA 47623 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || ||||||||||| || || || |||||||| || || ||||| ||||| || Sbjct 47622 AAGGGTACGGCCATCTTCAAGCTGCTTGCCTGCAAAGATAAGGCGCTGCTGGTCAGGGGG 47563 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||| || || ||||||||||| || || || || || || || | ||||| | ||| || Sbjct 47562 AATACCCTCCTTATCCTGAATCTTGGCCTTAACGTTGTCGATGGTGTCAGAGGATTCGAC 47503 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | ||||| ||||| | || || || || || ||||| Sbjct 47502 CTCAAGAGTGATAGTCTTGCCGGTCAAAGTCTTGACGAAGATTTGCAT 47455 >seq93 Length=51913 Score = 145 bits (160), Expect = 2e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || || ||||| || ||||| || || || || ||||| || Sbjct 49153 ACCACCACGAAGGCGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGA 49094 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || |||||||| || || || || |||||||| ||||| ||||||||||| || Sbjct 49093 GAGGGTGCGACCATCTTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCAGGGGG 49034 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||| ||||| || ||||| || || || || ||||| || || | || || | || || Sbjct 49033 AATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCGAC 48974 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | ||||| || || || ||||| ||||| |||||||| Sbjct 48973 CTCGAGGGTGATGGTCTTACCCGTGAGGGTTTTAACAAAGATCTGCAT 48926 >seq29 Length=82580 Score = 89.7 bits (98), Expect = 2e-12 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567 ||||||||||| | | || || || || || |||||||| || || || || || || Sbjct 51986 ATACCACCACGGAGACGGAGGACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCC 52045 Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627 || | || || || || || || || || || || ||||| ||||| ||||| || || Sbjct 52046 GAGAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCGGGG 52105 Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687 || || || || || ||||| || || || || || || || || | || || | || Sbjct 52106 GGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCC 52165 Query 140688 ACTTCAAGTGTAACTGTCTTTCCGGTT 140714 || ||||| || | ||||| || ||| Sbjct 52166 ACCTCAAGGGTGATGGTCTTACCTGTT 52192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514951849153952