Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001676635.1_202016-06-25] 15,584 sequences; 24,384,713 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq97 327 1e-84 seq383 100 3e-16 seq539 98.7 1e-15 >seq97 Length=50192 Score = 327 bits (362), Expect = 1e-84 Identities = 532/755 (70%), Gaps = 8/755 (1%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| ||||| | ||||| ||||| | ||| | | ||| ||||| ||| Sbjct 17943 TCATGCGTGTCGCTGTTGGTATTCACGGCCAGGACATCGAGAGTGCTATCGAGACTTACA 18002 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 || | ||| |||||||||||||| |||||| |||||||||| ||||||||||| || Sbjct 18003 ACCTCATGTCGCAAAAGTACTTTACTCACGCCTCGCCAACCCTCTTCAACGCTGGCACTC 18062 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 || |||||| | ||| ||| ||||| || || |||||||||||||||||||| |||| Sbjct 18063 CCCATCCTCAGCTCTCGTCCTGTTTCCTTGTTGCCATGAAGGATGACTCGATCGATGGCA 18122 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 | ||||| || |||||| |||||| ||||||||| | || || || ||| | Sbjct 18123 TTTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGACCGCCGGCGGCATTGGTTTGA 18182 Query 53433 AC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGAT 53491 || | | | | | || | | ||| | || || || ||||| ||| | | Sbjct 18183 ACATTCACTG-CATTCGAGGTACTGGCTCGTACATTGCCGGCACCAACGGTGTCAGCAAC 18241 Query 53492 GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGT 53551 || ||||| || ||||| || |||||||||||||| ||||| |||||| ||||||||||| Sbjct 18242 GGTATCGTTCCCATGCTTCGTGTCTTCAACAACACCGCCCGTTACGTCGACCAGGGTGGT 18301 Query 53552 GGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAG 53611 ||||| || | || ||||||||| | ||||| |||||| | || | | ||| Sbjct 18302 AACAAGCGTCCCGGTGCCTTTGCCATCTACATTGAGCCTTGGCACTCGGATGTCTTTGAG 18361 Query 53612 TTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TAC 53670 || ||||| |||| ||| || ||| | ||||| | || |||||| || || ||| Sbjct 18362 TTCCTCGACTTGCGCAAGAACCACGGTAAGGAAGAAGTTCGTGCCCGTGAACTCTTCTAC 18421 Query 53671 AGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCT 53730 ||||| ||| |||| || ||||||||| | | ||| ||| || ||| || |||| || Sbjct 18422 -GCTCTCTGGGTTCCCGATCTCTTCATGAAGAGGGTTGAGCAGAACGGCGAATGGTCGCT 18480 Query 53731 GATGTGCCCGAACGAGTGCCCCGGCCTC-CAGGGTGTCTACGGTGAGGAGTTTAACGAGA 53789 |||||||| |||||||||||||| ||| | | || |||||||||||||||| | Sbjct 18481 CATGTGCCCCAACGAGTGCCCCGGTCTCGCTGACTG-CTACGGTGAGGAGTTTGAGCGTC 18539 Query 53790 TGTATCGGACG-TACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTA 53848 | || || || |||| | | | || || | |||| | |||||||| | || | Sbjct 18540 TCTA-CGAGCGTTACGAGGCTGAAGGTCGTTCCAAGCGCACCGTCAAGGCTCAGAAGCTC 18598 Query 53849 TGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGAT 53908 ||| | || |||||| || ||| ||||| || | || | ||| ||||||||| Sbjct 18599 TGGTACGCCATCCTCGAGTCGCAGACCGAGACTGGTAACCCCTTCATCCTCTACAAGGAC 18658 Query 53909 TCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943 | | |||| ||| ||||||||||||| |||| Sbjct 18659 GCTGCCAACCGCAAGTCCAACCAGAAGAACCTCGG 18693 Score = 129 bits (142), Expect = 6e-25 Identities = 532/816 (65%), Gaps = 46/816 (6%) Strand=Plus/Plus Query 55138 GAACCTGAACCGGGTCATCGACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAA 55197 |||| ||||| | ||||||||| || |||||||| ||| | ||| || || || Sbjct 18859 GAACTTGAACAAGATCATCGACATCAACTACTACCCTGTTGAGGAGGCTCGTCGTTCTAA 18918 Query 55198 CCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCT 55257 | | || ||||| || |||| |||||||| ||||| | ||||| ||||||||| | Sbjct 18919 CATGCGTCACCGCCCTATCGGTATCGGTGTTCAGGGTCTTGCCGATGCCTTCATGATCAT 18978 Query 55258 CGGATTGCCCTTCGACTCGGAACCTGCTCGAGAAATTAACCAGGACATCTTC-AGTCGCA 55316 || | ||||||| ||| ||||| | | ||| | |||||| || | || Sbjct 18979 GGGTTACGCCTTCGAATCGCCCGAGGCTCGTCGATTGAACGTCCAGATCTTCGAGAC-CA 19037 Query 55317 TCTACTTTGCAGCGCTCGAGGAGTCGTGTCATCTGGCT-ATGAGCGAGGGGACCTACGAG 55375 ||||| ||| || || ||| ||||| | ||||| | |||| | || ||||||||| Sbjct 19038 TCTACCATGCCGCTCTTGAGCGATCGTGCGAGTTGGCTCAAGAGC-ACGGCACCTACGAG 19096 Query 55376 ACGTTCCGTGATTCGCCAGCTGACAAGGGACTTCTCCAGTTCGATCTATGGGGCAAGTCT 55435 || | | | || || ||| | |||| ||||||| ||| | ||||| ||| Sbjct 19097 ACCTACGCCGGCTCTCCTGCTTCCCAGGGTGAACTCCAGTACGACATGTGGGGT--GTCA 19154 Query 55436 GACC---CCATGTTTGACA-------AGT-TGAAGCATGACATTCACTTGTGGGGCCTAC 55484 || | || |||| | || | ||| | || | | || || | Sbjct 19155 CTCCTTCCGATCTTTGGGACTGGGCTAGCCTCAAGGCCAAGATCGCCAAGCACGGTCTCC 19214 Query 55485 GCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACA 55544 ||||||| || | | || || ||||| ||||| || || ||||||| |||| || Sbjct 19215 GCAACTCGCTCTTGCTCGCTCCCATGCCTACCGCATCTACAAGTCAGATCTTGGGTTTCA 19274 Query 55545 ACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGT 55604 |||| |||||||| ||||| ||||||||||| || || ||| || ||||| | Sbjct 19275 ACGAATGTTTCGAGCCCTACACCTCCAACATCTACTCTCGTCGTGTCCTCGCTGGTGAAT 19334 Query 55605 TTGTCATGATCAACAAGCACCTCGT----CAAGGACCTGCAGAAGATCAACAA--GTGGA 55658 | || | || ||| | | | || | || || | || || | ||||| Sbjct 19335 TC--CAGG-TCGTCAACC-CTTGGTTGCTCCGCGAACTC--GTTGAGCAGGGATTGTGGA 19388 Query 55659 ACC-CGCAGATCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAA---TCTG 55711 || | || || |||| || || || | | |||| || ||| ||||||| || Sbjct 19389 ACGACACA-ATGAAGAACCGTATCATCGCTC---ACGGTGGTTCCATCCAGAACGTTCCT 19444 Query 55712 GAGATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGT 55771 | || || ||| ||||| || | ||| ||| || |||||||| | |||||| | Sbjct 19445 GGTATCCCCGACCGTATCAAGAAGCTCTACAAGACTGTTTGGGAGATCTCCCAGAAGGCT 19504 Query 55772 CTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATC 55831 | || |||||| ||||| || ||||| | ||| |||||| || || || |||||| Sbjct 19505 ATCATCGACATGGCCGCTGACCGAGGTGCTTTCATTTGCCAGTCTCAATCGCTCAACATC 19564 Query 55832 TTCATGGAGAATCCTTCACT---GGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAG 55888 | || | ||| |||| || || ||||| ||||||||||| ||||| |||||| Sbjct 19565 CACTTGTCGGCTCC--CACTTTCGGTCA-GTTGACTTCGATGCACTTCTACGGTTGGAAG 19621 Query 55889 AAGGGACTCAAGACGGGTATGTACTATCTGCGGACC 55924 ||||| |||||||| |||| ||||| || || ||| Sbjct 19622 AAGGGTCTCAAGACCGGTACCTACTACCTTCGTACC 19657 >seq383 Length=18078 Score = 100 bits (110), Expect = 3e-16 Identities = 270/406 (67%), Gaps = 19/406 (5%) Strand=Plus/Plus Query 152769 GTTGAGGACCAAGCCCTTGATGTGCGATCCGTCAAGATCCGCGTCGGTCATGATCATCAG 152828 ||||| || | |||||||| ||||| || || ||||| |||||||||||||| | Sbjct 15642 GTTGATGATGAGACCCTTGATATGCGAACCATCGTGATCCTGATCGGTCATGATCATGAT 15701 Query 152829 ACGACCGTAGCGCAGG----TCACGTAGTGACCCGTAGACCTTTCCATGTTGAAGCCCGA 152884 || ||||| |||| | | |||| | || || || || ||||| || |||| Sbjct 15702 ACTGCCGTATCGCAAGCTGCTAACGTCGAGA----TATTGTTTGCCGTGTTGCAGACCGA 15757 Query 152885 GGATCTTTTTGAGG--TTGGAAAATTCCTCATTATCGGTCACCTGTTTCACCGTGGCATC 152942 | |||| |||| | || || || | || | | | ||| | || || || Sbjct 15758 GAATCTCCTTGATGGCTTTGATC--TCTGCGTTCTTCATGATCTGATCGTGAGTAGCCTC 15815 Query 152943 CCGAACATTGCGCGGCTTTCCCCGGAGTGGAAACACGCCGAACGCGTTGCGGCCTACAAC 153002 ||||| ||| | |||| || ||||| || || || ||| | || || || || | Sbjct 15816 ACGAACGTTGAGAAGCTTACCGCGGAGCGGGAAGACACCGTAGTTGTCACGACCCACTTC 15875 Query 153003 GCTCAGACCGGCAATAGCAAGGGCTTTCGCCGAGTCACCCTCGGTGATAATAAGCGTACA 153062 |||||||||| ||| || || || || |||||||| ||||||| ||| || ||||| Sbjct 15876 AACAAGACCGGCAACAGCGAGAGCCTTGGCTGAGTCACCTTCGGTGAGAATGAGTGTACA 15935 Query 153063 GTCGTGAGA---CCGATGAGTACCGGCCCAGTTGGCGTCGTCAAGCTTGGGGATTCCCGT 153119 ||| | || || || ||| || |||||| || || ||||||||||| || Sbjct 15936 GTCCTTAGCTTTCC--TGCC-ACCTGCATTGTTGGCATCTTCGAGCTTGGGGATGTTGGT 15992 Query 153120 GATCCTGCTTTTCTTAGAGCCGTCGGTTTTCTTCAGTTCCTTGGTC 153165 ||||||| | ||| |||||||| ||||| || || ||||| Sbjct 15993 GATCCTGGTACGCTTGTGACCGTCGGTCTTCTTGAGCGCC-TGGTC 16037 Score = 82.4 bits (90), Expect = 8e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 119083 GTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTGCTCCTCGTCGTT 119142 |||||| |||||||||||||| ||||||| |||||| || || ||| || |||| Sbjct 16833 GTTGGCGAGCTTGGCACCGTAACCGTTCCTACCACCCGTGACTTTGGCCTCGTCATCGTC 16892 Query 119143 GTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGGGAT 119187 ||||||||| || | ||||| || ||||||||||| ||||| Sbjct 16893 GTAGTTGGACGAAGTAAGGAGGTGACCGAAGATGAGCTCTGGGAT 16937 >seq539 Length=9559 Score = 98.7 bits (108), Expect = 1e-15 Identities = 306/469 (65%), Gaps = 10/469 (2%) Strand=Plus/Minus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 || || ||||| || ||||||||||| | ||| ||||| | ||| ||||| |||| Sbjct 6030 AGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAAGAACCGGAGAAG 5971 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGC--ATCGGAAG 74922 ||||| || || || ||||||||| || || || | || || | || |||| | Sbjct 5970 AAGATACCCTCTACGGCCGCAAAGGCAACGAGACGCTCTGCAAAGGTGGCCTTTCGGTCG 5911 Query 74923 -TCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCT 74981 | ||||| | ||||| ||||| || | ||||| | |||| || |||| || Sbjct 5910 CTAATCCAGCGGAGGGCCCAGTCAGCCTTCTGCTTGACGACCGGGATGGTTTCGACGGCG 5851 Query 74982 TGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTAC 75041 | |||||| | | || ||||| || || | |||| || | ||| || || Sbjct 5850 TCAAAGAGGAATTCGCGCTGCTCGGGCTCACGGATGTAAGTGTCGATGAGAAGCGAATAG 5791 Query 75042 GTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCA 75101 ||||| || || || ||| | | |||| | ||||||| | || ||||| ||| Sbjct 5790 GTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGCA 5731 Query 75102 ATCTGTACATC--CTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGG 75159 ||| || || ||||| || | ||| ||||| ||||||| || || || | Sbjct 5730 GCCTGAACCTCGGAACTGAAACGCTC--GACGAGGTTCTCGTTGACGATACCATCGGAAG 5673 Query 75160 CGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAG---TTTGT 75216 | ||||| || || || || ||| ||||| ||||| | ||| |||| |||| Sbjct 5672 CAGCGAAGAAGGCGAGGACGTGGGAGATGAAGTGACGCTCGTTGTCGTTGAGCTTGTTGT 5613 Query 75217 CCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265 |||| || | |||||| | | || ||||||||| | |||||||| Sbjct 5612 CCCAGTCATGAAGGTCCTTGGAGAGGTCGATCTCCTCGGCGGTCCAGAA 5564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547109402323200