Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001676635.1_202016-06-25] 15,584 sequences; 24,384,713 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq97 282 5e-71 seq17 179 4e-40 seq957 161 1e-34 seq93 161 1e-34 seq29 136 5e-27 seq539 116 4e-21 >seq97 Length=50192 Score = 282 bits (312), Expect = 5e-71 Identities = 820/1239 (66%), Gaps = 45/1239 (4%) Strand=Plus/Minus Query 80538 ACCCCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTA 80597 |||||||||||||| ||| | |||| || || ||||| || ||| | |||||||| Sbjct 19150 ACCCCACATGTCGTACTGGAGTTCACCCTGGGAAGCAGGAGAGCCGGCGTAGGTCTCGTA 19091 Query 80598 CGGGCCCTCCGTCTTG-GCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACT 80656 | ||| | | ||||| |||| ||| ||||| | ||| || || || || ||| || Sbjct 19090 GGTGCCGTGC-TCTTGAGCCAACTCGCACGATCGCTCAAGAGCGGCATGGTAGATGGTCT 19032 Query 80657 CAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCA 80716 | |||| ||||| | || |||| || ||||| | | ||||| |||| Sbjct 19031 CGAAGATCTGGACGTTCAATCGACGAGCCTCGGGCGATTCGAAGGCGTAACCCATGATCA 18972 Query 80717 TGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATC 80776 |||| | || || || |||||||| ||||| |||| |||||||| ||| |||| || | Sbjct 18971 TGAAGGCATCGGCAAGACCCTGAACACCGATACCGATAGGGCGGTGACGCATGTTAGAAC 18912 Query 80777 GCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAA 80836 | |||||| || ||||| |||| | ||||||| ||||| ||| | || | Sbjct 18911 GACGAGCCTCCTCAACAGGGTAGTAGTTGATGTCGATGATCTTGTTCAAGTT-CTTGCAG 18853 Query 80837 CAACCCGTGT-AACATCATGAAGTTTCTGAAAGTCGAA----TTGGTTCCCCT-TC-ACA 80889 | || || ||| || || | || ||||| | ||||| | || | Sbjct 18852 ATAGCCTTGGCAACCTCGTGCAAACGCTTGTAGTCGTAGACCTTGGTGACAGGGTCGATG 18793 Query 80890 AATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTC---AGCATCTGTA 80946 || | ||||| | ||| || || ||||| || || ||||| || |||| ||||| Sbjct 18792 AAGGTGGGAAGAGCGATGGAGGCAAGGTTGCAAACAGCAACCTCATCGGGAGCA-CTGTA 18734 Query 80947 AACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTT 81006 ||||| ||| || |||||||| || || |||| || ||||| ||||| |||||||| Sbjct 18733 --CTCGATGATCTCAGTGCACAAGTTGGAGCACTTGATAGTACCGAGGTTCTTCTGGTTG 18676 Query 81007 GACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGAC 81066 |||||| |||| ||||||||||||| ||| | ||| |||| |||||| ||| ||| Sbjct 18675 GACTTGCGGTTGGCAGCGTCCTTGTAGAGGATGAAGGGGTTACCAGTCTCGGTCTGCGAC 18616 Query 81067 TTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCG---GAATTTGCCTTCG 81123 | ||||||||||| ||| | || | |||||| || |||| | | ||||| Sbjct 18615 TCGAGGATGGCGTACCAGAGCTTCTGAGCCTTG---ACGGTGCGCTTGGAACGACCTTCA 18559 Query 81124 GCCACATACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTG 81181 ||| | || |||| || | || |||| |||||| | || |||| ||| | | Sbjct 18558 GCCTCGTAACGCTCGTAGAGACGC-TCAAACTCCTCACCGTAGCAG-TCAGCGAGACCGG 18501 Query 81182 GGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAG 81241 |||||||||| |||||||| || ||| ||| || | ||| || ||||||||| Sbjct 18500 GGCACTCGTTGGGGCACATGAGCGACCATTCGCCGTTCTGCTCAACCCTCTTCATGAAGA 18441 Query 81242 CGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGT 81301 || || | |||||| ||| ||| || || ||| || | || || | ||| |||| Sbjct 18440 GATCGGGAACCCAGAGAGCGTAGAAGAGTTCACGGGCACGAACTTCTTCCTTACCGTGGT 18381 Query 81302 TGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGA 81361 | |||||| ||||| || || | || |||| ||||| ||||| | || | ||| | Sbjct 18380 TCTTGCGCAAGTCGAGGAACTCAAAGACATCCGAGTGCCAAGGCTCAATGTAGATGGCAA 18321 Query 81362 TCGACCCCTTGCGACG------GCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATA 81415 | || | |||| |||||||||| |||||||||||| || ||| || | Sbjct 18320 AGGCACC---GGGACGCTTGTTACCACCCTGGTCGACGTAACGGGCGGTGTTGTTGAAGA 18264 Query 81416 CACGCAACATAGGGATGATACCAT--CTGACTGACCGTTCGTACCCACGATACGCGACCC 81473 |||| | ||| || | |||||| | ||||| |||||| || || | || ||| || Sbjct 18263 CACGAAGCATGGGAACGATACCGTTGCTGAC--ACCGTTGGTGCCGGCAATGTACGAGCC 18206 Query 81474 CTTGGCGCGCACCTTGC--TGATTG-AAAGACCGATGCCACCTGACCACTTTGAAATCTG 81530 | | || | ||| ||| || | ||| ||||| || | ||| || ||| Sbjct 18205 AGTACCTCGAA---TGCAGTGAATGTTCAAACCAATGCCGCCGGCGGTCTTGGAGATCAT 18149 Query 81531 AGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAA 81590 ||||| || | ||| || ||||| || ||||| || | |||||| ||| | Sbjct 18148 GGCACAGGTCTTGAGGGTGTCGTAAATGCCATCGATCGAGTCATCCTTCATGGCAACAAG 18089 Query 81591 GAAACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTG 81650 ||||||| || | |||||| | ||| || ||||| || ||||| | ||||| Sbjct 18088 GAAACAGGACGAGAGCTGAGGATGGGGAGTGCCAGCGTTGAAGAGGGTTGGCGAGGCGTG 18029 Query 81651 AATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACC 81710 | | || || | ||||| |||| || || || | | | || || | || Sbjct 18028 AGTAAAGTACTTTTGCGACATGAGGTTGTAAGTCTCGATAGCACTCTCGATGTCCTGGCC 17969 Query 81711 GTGAATACCGATAGCTACACGCATAAACATGTACTGGGG 81749 ||||||||| | ||| |||||||| | ||||| |||||| Sbjct 17968 GTGAATACCAACAGCGACACGCATGAGCATGTGCTGGGG 17930 Score = 93.3 bits (102), Expect = 5e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || || || ||||| | || |||||||| ||||||||||| ||||| | |||||| ||| Sbjct 19656 GTACGAAGGTAGTAGGTACCGGTCTTGAGACCCTTCTTCCAACCGTAGAAGTGCATCGAA 19597 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 | | || | | ||||| | || | |||||| || || |||||||| || ||| Sbjct 19596 GTCAACTGACCGAAAGTGGGAGCCGACAAGTGGATGTTGAGCGATTGAGACTGGCAAATG 19537 Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGT 80216 ||||| || || || || ||||| || || || | ||| || | || ||||| || || Sbjct 19536 AAAGCACCTCGGTCAGCGGCCATGTCGATGATAGCCTTCTGGGAGATCTCCCAAACAGT 19478 >seq17 Length=97802 Score = 179 bits (198), Expect = 4e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| | |||||||||||||| ||||||||||| || || | Sbjct 47455 ATGCAAATCTTCGTCAAGACTTTGACCGGCAAGACTATCACTCTTGAGGTCGAATCCTCT 47514 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || |||||||| |||||||| ||||| || |||||| Sbjct 47515 GACACCATCGACAACGTTAAGGCCAAGATTCAGGATAAGGAGGGTATTCCCCCTGACCAG 47574 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || ||||| || ||||| || || |||| |||||||| | ||||| || Sbjct 47575 CAGCGCCTTATCTTTGCAGGCAAGCAGCTTGAAGATGGCCGTACCCTTTCCGACTACAAC 47634 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| ||||| | ||||| ||| | |||||||| || || Sbjct 47635 ATTCAGAAGGAGTCCACCTTGCATCTTGTCCTCCGTCTTCGTGGCGG 47681 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || ||||||||||| || || || ||||| ||||| Sbjct 47227 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCG 47286 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||||| || || ||||||||||| || || || || || ||| Sbjct 47287 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCACCTGATCAG 47346 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||||||||| |||||||||| || || || | ||||| || Sbjct 47347 CAGCGACTCATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGCACTCTCTCGGACTACAAC 47406 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || |||||||| || || || | || || || ||||| Sbjct 47407 ATCCAGAAAGAGTCCACTCTCCACCTTGTTCTCCGCCTCCGTGGTGG 47453 >seq957 Length=1833 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||||||||||||||| || || ||||| || ||| | || || || || Sbjct 432 ATGCAGATCTTTGTCAAGACGCTCACAGGAAAGACCATCACTTTGGAAGTCGAATCTTCG 373 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | ||||| || |||||||||||||| || |||||||| |||||| Sbjct 372 GACACGATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGGTATTCCTCCTGACCAG 313 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | |||||||||||||| || | ||||||| || || || | || || ||| Sbjct 312 CAGCGATTGATTTTTGCTGGTAAACAGTTGGAGGATGGACGAACTCTGTCTGATTACAAT 253 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| |||||||| || || ||||||||||| || || Sbjct 252 ATTCAGAAGGAGAGTACTCTTCACCTTGTTTTGCGTCTTCGTGGCGG 206 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| | ||||||||||| |||||||| || || ||||| Sbjct 660 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATTACTCTCGAAGTCGAGTCCTCG 601 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||||| || || ||||| ||||| || ||||| || |||||| Sbjct 600 GACACTATCGACAATGTTAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAG 541 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || |||||||| ||||| ||||| || | || ||||| | || || || Sbjct 540 CAGCGCCTTATCTTTGCTGGAAAGCAGCTCGAAGACGGCCGAACCCTCTCGGATTACAAC 481 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||||||||| | ||||| || |||| | || ||||| Sbjct 480 ATCCAAAAGGAATCCACGTTGCATCTCGTTCTGCGATTGCGAGGTGG 434 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || ||||| ||||| || || || ||||| ||||| Sbjct 888 ATGCAGATCTTCGTAAAGACTCTGACCGGTAAGACCATCACCCTCGAGGTGGAGTCTTCC 829 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || ||||||||||||||||| |||||||| || ||| Sbjct 828 GACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGTATTCCTCCCGATCAG 769 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| ||||| || || ||||| || ||||||| || ||||| | ||||| || Sbjct 768 CAGCGTCTCATTTTCGCCGGAAAGCAGCTTGAGGATGGACGAACCCTTTCGGACTACAAC 709 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || || | ||||| || ||||| Sbjct 708 ATCCAGAAGGAGTCGACCCTCCACCTGGTTCTCCGTCTCCGTGGTGG 662 >seq93 Length=51913 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || || || || ||||| || || || ||||| ||||| Sbjct 48926 ATGCAGATCTTTGTTAAAACCCTCACGGGTAAGACCATCACCCTCGAGGTCGAGTCTTCG 48985 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || ||||||||||| || ||||| || || ||| Sbjct 48986 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 49045 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||| || ||||| ||||| |||| ||| ||||| | || || || Sbjct 49046 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAAGATGGTCGCACCCTCTCGGATTACAAC 49105 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| ||||| || ||| | || ||||| ||||| Sbjct 49106 ATCCAGAAGGAGTCCACCCTTCACCTCGTCCTCCGCCTTCGTGGTGG 49152 >seq29 Length=82580 Score = 136 bits (150), Expect = 5e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || || ||||| || || |||||||| ||||| || | ||| | || | ||||| Sbjct 52191 ACAGGTAAGACCATCACCCTTGAGGTGGAGTCTTCCGACACCATCGACAACGTCAAGGCC 52132 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||| || || || |||||||||||||| || || || |||||| Sbjct 52131 AAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAGCAGCGTCTCATCTTCGCCGGTAAG 52072 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || |||||||| | || ||||| | ||||| || |||| ||||| || || || || Sbjct 52071 CAGCTCGAGGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCTACCCTCCAC 52012 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | ||||| || ||||| Sbjct 52011 CTCGTCCTCCGTCTCCGTGGTGG 51989 >seq539 Length=9559 Score = 116 bits (128), Expect = 4e-21 Identities = 163/228 (71%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 64666 AAGGCTGAATGGGCCATCCGGTGGATGA---ATCGTGGGTCGTCGTTTGGTCAGCGTCTC 64722 |||||||| |||||| |||| ||||| | | || | | | |||| |||||||| Sbjct 5882 AAGGCTGACTGGGCCCTCCGCTGGATTAGCGACCGAAAGGCCACCTTTGCAGAGCGTCTC 5941 Query 64723 GCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGG 64782 | || ||||| || || || || ||||| || || || ||| ||||| |||||| Sbjct 5942 GTTGCCTTTGCGGCCGTAGAGGGTATCTTCTTCTCCGGTTCTTTCGCCTCTATCTTCTGG 6001 Query 64783 CTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGAC 64842 || || ||||| || || ||||| ||||| | || || |||||||| ||||| || ||| Sbjct 6002 CTCAAGAAGCGTGGTCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCCCGCGAC 6061 Query 64843 GAGGGGCTCCACCAAGAATTTGCGGTTACCCTGTTCAGCCACCTCAAG 64890 ||||| || ||| || || || ||| ||||||||||||||| Sbjct 6062 GAGGGTCTTCACACCGACTTCGCCTGCCTCCTCTTCAGCCACCTCAAG 6109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570199303534080