Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001676635.1_202016-06-25] 15,584 sequences; 24,384,713 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq290 134 1e-26 >seq290 Length=24650 Score = 134 bits (148), Expect = 1e-26 Identities = 399/615 (65%), Gaps = 38/615 (6%) Strand=Plus/Plus Query 29834 AGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCC 29893 ||| |||| ||||| || || | ||||||||| |||| ||||| || |||| ||| Sbjct 15901 AGTTTGGGGAAGGGAAGTGGTTCTCGTTCGAGCTGAATCTTGAGCGGCTCTACGTGATCT 15960 Query 29894 AGGTAGACGTGAGCGTCTCCCAGGTTGT--GGACAAACTCTCCCGGTTCTAGCCCGGTGA 29951 ||||||||||||||| |||| ||| | || | || || || | |||| Sbjct 15961 TTGTAGACGTGAGCGTCACCCA--TTGAAAGAACGAGTTCCTTTGGCTCGCAATCAGTGA 16018 Query 29952 CGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCC 30011 | | ||| |||||||| ||||| | || |||||| || ||||| ||||| || || | | Sbjct 16019 CTTTAGCGATCATGTAAGTGAGCAAAGCGTAGCTAGCAATGTTGAAGGGGACTCCCAATC 16078 Query 30012 CCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCT---------CT----CCGTCG 30058 | | || | || | ||||| | |||||||||||||| || || | | Sbjct 16079 CAAGATCGCAGGAACGTTGGTACATCTGACACGAGAGCTGCTTCCTGCCTTGACCCTTGG 16138 Query 30059 C-------TCA----------CGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCA 30101 | ||| || | || ||||| | ||| || || |||||||||| Sbjct 16139 CATATGCGTCAAGGTTGGAGACGAAGAATTGACAGAACATGTGACAAGGTGGAAGAGCCA 16198 Query 30102 TGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGT 30161 ||||| | |||||||||||||| |||| | | ||| | | || ||||||| Sbjct 16199 TGAGGGAGAGATCTTTGGGGTTCCATGCGCTGAGCAAGATTCTGCGATCGGTAGGGTTGT 16258 Query 30162 TCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTC--TGC 30219 || |||| ||| | | | | | || || || || ||| || | |||||| || Sbjct 16259 TCTTGATCTTGTCGATGACATCGCGGAGTTGGTCGACGCCCTGACCGGTGTAGTCGGTGT 16318 Query 30220 CCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAG 30279 | || || |||| || || || ||||| | ||| ||||| ||||| || || |||| Sbjct 16319 CACAATCTC--TGTATTCGGCGCCAAAATGACGCCATTGGAAACCGTAGACTGGACCCAA 16376 Query 30280 GTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGC 30339 ||| || || ||||||| || || | ||| | || |||| ||||||||| | Sbjct 16377 GTCACCTTCCCTTCTGTGCTGCAATCCTCGAGAGTCAAGGAACTCTCGTGAACCGTTGCC 16436 Query 30340 GTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAA 30399 |||||||| | || || || || | |||| ||||||| || || || || Sbjct 16437 ATCCCAGATGTGCACACCTTTGTCTGTGAGCAACTTGGAGTCGGTCTTTCCAGCAACAAA 16496 Query 30400 CCACAGCAGCTCCTC 30414 ||| || |||||||| Sbjct 16497 CCAGAGTAGCTCCTC 16511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406233229465728