Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001676635.1_202016-06-25] 15,584 sequences; 24,384,713 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq290 159 3e-34 >seq290 Length=24650 Score = 159 bits (176), Expect = 3e-34 Identities = 431/662 (65%), Gaps = 32/662 (5%) Strand=Plus/Plus Query 6494 ATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATG 6553 || ||||| | |||||| || | || ||||||| ||||| ||| |||| |||| | | Sbjct 15895 ATGTTGAGTTTGGGGAAGGGAAGTGGTTCTCGTTCGAGCTGAATCTTGAGCGGCTCTACG 15954 Query 6554 TGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCC 6613 || | ||||| || || || |||| | | | || || ||| || | | | Sbjct 15955 TGATCTTTGTAGACGTGAGCGTCACCCATTGAAAGAACGAGTTCCTTTGGCTCGCAATCA 16014 Query 6614 ACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCT 6673 ||| | |||||||||||| ||||||| |||||| |||||||||||||| || || || Sbjct 16015 GTGACTTTAGCGATCATGTAAGTGAGCAAAGCGTAGCTAGCAATGTTGAAGGGGACTCCC 16074 Query 6674 AACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCT--------------CCC 6719 || || | || | || ||||| || | ||| || || |||| ||| Sbjct 16075 AATCCAAGATCGCAGGAACGTTGGTACATCTGACACGAGAGCTGCTTCCTGCCTTGACCC 16134 Query 6720 ----CA------------TTCGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGC 6763 || || | |||| ||||||| |||| |||| || || || || Sbjct 16135 TTGGCATATGCGTCAAGGTTGGAGACGAAGAATTGACAGAACATGTGACAAGGTGGAAGA 16194 Query 6764 GCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGG 6823 ||||| || | |||||| || |||||||| |||| | || ||| || | || |||| Sbjct 16195 GCCATGAGGGAGAGATCTTTGGGGTTCCATGCGCTGAGCAAGATTCTGCGATCGGTAGGG 16254 Query 6824 TTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCC 6883 || ||| | ||||||| || | | || ||||| | ||||| || | ||||| Sbjct 16255 TTGTTCTTGATCTTGTCGATGACATCGCGGAGTTGGTCGACGCCCTGACCGGTGTAGTCG 16314 Query 6884 GCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCC 6943 | || | | | || || || ||||| || | ||| ||||| |||||||| || ||| Sbjct 16315 GTGTCACAATCTCTGTATTCGGCGCCAAAATGACGCCATTGGAAACCGTAGACTGGACCC 16374 Query 6944 AAGTCGCCCT-CCTCCCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTG 7002 ||||| || | ||| | | | | | || || || ||| || || ||||| || |||| Sbjct 16375 AAGTCACCTTCCCTTCTGTGCT-GCAATCCTCGAGAGTCAAGGAACTCTCGTGAACCGTT 16433 Query 7003 AGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCAC 7062 | |||||||| | ||| || | | |||| ||||| || || || || Sbjct 16434 GCCATCCCAGATGTGCACACCTTTGTCTGTGAGCAACTTGGAGTCGGTCTTTCCAGCAAC 16493 Query 7063 GAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGG 7122 ||||| || |||||||||| || || || | ||||| || || |||||||| || Sbjct 16494 AAACCAGAGTAGCTCCTCGAGAACACCGCGAAAGAAGACACGCTTTGTTGTCAGCAGAGG 16553 Query 7123 AA 7124 || Sbjct 16554 AA 16555 Score = 159 bits (176), Expect = 3e-34 Identities = 431/662 (65%), Gaps = 32/662 (5%) Strand=Plus/Minus Query 34221 TTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGT 34280 |||| |||||||| || || ||||| | || || || |||||||||| || |||| Sbjct 16555 TTCCTCTGCTGACAACAAAGCGTGTCTTCTTTCGCGGTGTTCTCGAGGAGCTACTCTGGT 16496 Query 34281 TCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACG 34340 | || || || || ||||| |||| | | || ||| | |||||||| | Sbjct 16495 TTGTTGCTGGAAAGACCGACTCCAAGTTGCTCACAGACAAAGGTGTGCACATCTGGGATG 16436 Query 34341 CTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGG-AGGGCGAC 34399 |||| || ||||| || || ||| || || || | | | | | ||| | || ||| Sbjct 16435 GCAACGGTTCACGAGAGTTCCTTGACTCTCGAGGATTGC-AGCACAGAAGGGAAGGTGAC 16377 Query 34400 TTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAA 34459 ||||| || |||||||| ||||| ||| | || ||||| || || || | | | || Sbjct 16376 TTGGGTCCAGTCTACGGTTTCCAATGGCGTCATTTTGGCGCCGAATACAGAGATTGTGAC 16317 Query 34460 GCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGG 34519 | ||||| | || ||||| | ||||| || | | || ||||||| | ||| Sbjct 16316 ACCGACTACACCGGTCAGGGCGTCGACCAACTCCGCGATGTCATCGACAAGATCAAGAAC 16257 Query 34520 AACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATG 34579 |||||| || | || ||| || | |||| |||||||| || |||||| | || ||| Sbjct 16256 AACCCTACCGATCGCAGAATCTTGCTCAGCGCATGGAACCCCAAAGATCTCTCCCTCATG 16197 Query 34580 GCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAA------------TG-- 34625 || || || || || |||| |||| ||||||| |||| | || || Sbjct 16196 GCTCTTCCACCTTGTCACATGTTCTGTCAATTCTTCGTCTCCAACCTTGACGCATATGCC 16137 Query 34626 --GGG--------------AGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGG 34669 ||| |||| || || ||| | || ||||| || | || | || Sbjct 16136 AAGGGTCAAGGCAGGAAGCAGCTCTCGTGTCAGATGTACCAACGTTCCTGCGATCTTGGA 16077 Query 34670 TTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 || || || || |||||||||||||| |||||| ||||||| |||||||||||| | ||| Sbjct 16076 TTGGGAGTCCCCTTCAACATTGCTAGCTACGCTTTGCTCACTTACATGATCGCTAAAGTC 16017 Query 34730 GTGGGGTTGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAAC 34789 | | | || ||| || || | | | |||| || || || ||||| | Sbjct 16016 ACTGATTGCGAGCCAAAGGAACTCGTTCTTTCAATGGGTGACGCTCACGTCTACAAAGAT 15957 Query 34790 CACATCGAGCGGCTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAA 34849 ||| | |||| |||| ||| ||||| ||||||| || | || |||||| | ||||| Sbjct 15956 CACGTAGAGCCGCTCAAGATTCAGCTCGAACGAGAACCACTTCCCTTCCCCAAACTCAAC 15897 Query 34850 AT 34851 || Sbjct 15896 AT 15895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448175078484480