Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001676635.1_202016-06-25] 15,584 sequences; 24,384,713 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq93 123 2e-23 seq957 107 1e-18 seq17 95.1 8e-15 >seq93 Length=51913 Score = 123 bits (136), Expect = 2e-23 Identities = 152/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 23604 ACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGA 23663 ||| || |||||||| || ||||||||||||||||| || || ||||| ||||| || || Sbjct 48919 ACTCAAGATGCAGATCTTTGTTAAAACCCTCACGGGTAAGACCATCACCCTCGAGGTCGA 48978 Query 23664 CTCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGC 23722 || ||||||| | || ||| | || | || | | ||||| ||||| | || | Sbjct 48979 GTCTTCGGACACCATCGACAATGTCAAGGCCAAGA-TCCAGGACAAGGAAGGCATTCCCC 49037 Query 23723 CAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCG 23782 | ||||| |||||| | || ||||||||||| || || ||||| | ||||| | | Sbjct 49038 CTGATCAGCAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAAGATGGTCGCACCCTCTCGG 49097 Query 23783 ATTACAACATACAAAAAGAGTCCAC 23807 |||||||||| || || |||||||| Sbjct 49098 ATTACAACATCCAGAAGGAGTCCAC 49122 >seq957 Length=1833 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||| | || || || || || ||||||||||| || ||| || Sbjct 660 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATTACTCTCGAAGTCGAGTCCTCG 601 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || ||| |||| | || | | || || ||||| | || || || || Sbjct 600 GACACTATCGACAATGTTAAGGCCAAGA-TCCAGGATAAGGAAGGCATTCCCCCTGACCA 542 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || ||||| || || || || ||||||| || || | |||||||| Sbjct 541 GCAGCGCCTTATCTTTGCTGGAAAGCAGCTCGAAGACGGCCGAACCCTCTCGGATTACAA 482 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| ||||| || ||||| || ||| | ||| | | |||||||| || Sbjct 481 CATCCAAAAGGAATCCACGTTGCATCTCGTTCTGCGATTGCGAGGTGG 434 >seq17 Length=97802 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || |||||||| || || || ||||| ||||| || || ||| || Sbjct 47227 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCG 47286 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||||| ||||| | || || ||||| Sbjct 47287 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCACCTGATCAG 47346 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || || || || || || || || | |||||| | || |||||| Sbjct 47347 CAGCGACTCATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGCACTCTCTCGGACTACAAC 47406 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 47407 ATCCAGAAAGAGTCCAC 47423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337945401836672