Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001676635.1_202016-06-25] 15,584 sequences; 24,384,713 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq17 149 1e-30 seq93 136 9e-27 seq957 131 4e-25 seq29 118 3e-21 seq1591 104 6e-17 >seq17 Length=97802 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | |||||||| || | ||||| || || || | ||||| |||| | || Sbjct 47676 ACGAAGACGGAGGACAAGATGCAAGGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGGGT 47617 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||| || || |||||||| || || ||||| || |||||||| Sbjct 47616 ACGGCCATCTTCAAGCTGCTTGCCTGCAAAGATAAGGCGCTGCTGGTCAGGGGGAATACC 47557 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| || || ||||| ||| || ||||||||||| |||| ||| || || | Sbjct 47556 CTCCTTATCCTGAATCTTGGCCTTAACGTTGTCGATGGTGTCAGAGGATTCGACCTCAAG 47497 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| |||||||| || | ||| | |||||| Sbjct 47496 AGTGATAGTCTTGCCGGTCAAAGTCTTGACGAAGATTTGCAT 47455 Score = 141 bits (156), Expect = 2e-28 Identities = 144/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||||||||||||||| ||||| |||| ||||| || | | ||| | ||||| Sbjct 47438 AGAACAAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCATCC 47379 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| ||||| || || || || || || ||||||||||| Sbjct 47378 TCGAGCTGCTTACCAGCGAAGATGAGTCGCTGCTGATCAGGTGGGATGCCTTCCTTGTCC 47319 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || || |||||||| |||| || || || | ||||| ||| Sbjct 47318 TGGATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTC 47259 Query 225682 TTGCCCGT 225689 ||||| || Sbjct 47258 TTGCCGGT 47251 >seq93 Length=51913 Score = 136 bits (150), Expect = 9e-27 Identities = 165/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| ||||| || ||||| || || |||| |||||||| | | || Sbjct 49147 ACGAAGGCGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAGAGGGT 49088 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||| || || ||||| || || || || || || ||||| || Sbjct 49087 GCGACCATCTTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCAGGGGGAATGCC 49028 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| |||||||| ||| ||| ||||||||||| || | || || || | Sbjct 49027 TTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCGACCTCGAG 48968 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| ||||| ||||| | ||||| | || | ||||| || Sbjct 48967 GGTGATGGTCTTACCCGTGAGGGTTTTAACAAAGATCTGCATCTT 48923 >seq957 Length=1833 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || |||||||| || || || || |||| ||||| || | | |||| ||||| Sbjct 677 AGAACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTTCGTCCATCC 736 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || ||||| || || || || || ||||| |||||||| |||||||| Sbjct 737 TCAAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCC 796 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| || ||||||||||| || | ||||| || | ||||| ||| Sbjct 797 TGAATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTC 856 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || |||| ||| |||| ||| | ||||| Sbjct 857 TTACCGGTCAGAGTCTTTACGAAGATCTGCAT 888 Score = 123 bits (136), Expect = 6e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || |||||||| ||||| || || || | ||||||||| | || ||| Sbjct 211 ACGAAGACGCAAAACAAGGTGAAGAGTACTCTCCTTCTGAATATTGTAATCAGACAGAGT 270 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || ||||| || | ||| || ||||| || || | ||| || ||||| || |||||||| Sbjct 271 TCGTCCATCCTCCAACTGTTTACCAGCAAAAATCAATCGCTGCTGGTCAGGAGGAATACC 330 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| || ||||| ||| ||| || || ||||| || | ||| || || || Sbjct 331 TTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATCGTGTCCGAAGATTCGACTTCCAA 390 Query 225672 CGTGATCGTCTTGCCCGT 225689 ||||| ||||| || || Sbjct 391 AGTGATGGTCTTTCCTGT 408 >seq29 Length=82580 Score = 118 bits (130), Expect = 3e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| |||||||| || || || || |||| ||||| || | | || | || || Sbjct 52004 AGGACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCC 52063 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || |||||||| || ||||| |||||||| Sbjct 52064 TCGAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCC 52123 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| || | ||||| || | ||||| ||| Sbjct 52124 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTC 52183 Query 225682 TTGCCCGT 225689 || || || Sbjct 52184 TTACCTGT 52191 >seq1591 Length=667 Score = 104 bits (114), Expect = 6e-17 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||||| ||||| ||||||||||| || ||||| ||||| ||||| |||||| | |||||| Sbjct 514 CAACTATACAATGTTATTATTACAGCACATGCGTTTGTAATGATCTTCTTTATGGTTATG 573 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || | |||| | || || ||||| || | | || || | |||||||||||||||||| Sbjct 574 CCAGCTATGGTCGGTGGATTCGGTAACTATCTTGTACCAGTTATGATTGGTGCTCCTGAT 633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192293087295296