Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001676635.1_202016-06-25] 15,584 sequences; 24,384,713 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq290 140 2e-28 >seq290 Length=24650 Score = 140 bits (154), Expect = 2e-28 Identities = 397/613 (65%), Gaps = 34/613 (6%) Strand=Plus/Plus Query 27100 AGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCC 27159 ||| |||| ||||| || || | ||||||||| |||| ||||| || |||||||| Sbjct 15901 AGTTTGGGGAAGGGAAGTGGTTCTCGTTCGAGCTGAATCTTGAGCGGCTCTACGTGATCT 15960 Query 27160 AGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACG 27219 ||||||||||||||| |||| | | || | || || || | ||||| Sbjct 15961 TTGTAGACGTGAGCGTCACCCATTGAAAGAACGAGTTCCTTTGGCTCGCAATCAGTGACT 16020 Query 27220 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCC 27279 | ||| |||||||| ||||| | || |||||| || ||||| ||||| || || | || Sbjct 16021 TTAGCGATCATGTAAGTGAGCAAAGCGTAGCTAGCAATGTTGAAGGGGACTCCCAATCCA 16080 Query 27280 ATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCT---------CT----CCATCGCT 27326 | || | || | ||||| | |||||||||||||| || || | || Sbjct 16081 AGATCGCAGGAACGTTGGTACATCTGACACGAGAGCTGCTTCCTGCCTTGACCCTTGGCA 16140 Query 27327 TA-----------------CGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATG 27369 || || | || ||||| | ||| || || |||||||||||| Sbjct 16141 TATGCGTCAAGGTTGGAGACGAAGAATTGACAGAACATGTGACAAGGTGGAAGAGCCATG 16200 Query 27370 AGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTC 27429 ||| | |||||||||||||| |||| | | ||| | | || ||||||||| Sbjct 16201 AGGGAGAGATCTTTGGGGTTCCATGCGCTGAGCAAGATTCTGCGATCGGTAGGGTTGTTC 16260 Query 27430 CTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTC--TACCC 27487 |||| ||| | | | | | || || || || ||| || | |||||| | | Sbjct 16261 TTGATCTTGTCGATGACATCGCGGAGTTGGTCGACGCCCTGACCGGTGTAGTCGGTGTCA 16320 Query 27488 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGT 27547 || || |||| || || || ||||| | ||||||||| ||||| || || |||| || Sbjct 16321 CAATCTC--TGTATTCGGCGCCAAAATGACGCCATTGGAAACCGTAGACTGGACCCAAGT 16378 Query 27548 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 27607 | || || ||||||| || || | ||| | || |||| ||||||||| | | Sbjct 16379 CACCTTCCCTTCTGTGCTGCAATCCTCGAGAGTCAAGGAACTCTCGTGAACCGTTGCCAT 16438 Query 27608 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 27667 ||||||| | || || || || | |||| ||||||| || || || |||| Sbjct 16439 CCCAGATGTGCACACCTTTGTCTGTGAGCAACTTGGAGTCGGTCTTTCCAGCAACAAACC 16498 Query 27668 ACAGCAGCTCCTC 27680 | || |||||||| Sbjct 16499 AGAGTAGCTCCTC 16511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369437019497504