Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001676635.1_202016-06-25] 15,584 sequences; 24,384,713 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq539 132 7e-26 >seq539 Length=9559 Score = 132 bits (146), Expect = 7e-26 Identities = 343/519 (66%), Gaps = 14/519 (3%) Strand=Plus/Minus Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242 ||||| || || |||||||||||||| || ||||| || |||||||| || || | ||| Sbjct 6045 TCGTTGGAGAAGGTGAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCG 5986 Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA 48302 ||||| || || ||||| || || |||||||||||||| || || | |||| | | Sbjct 5985 AAAGAACCGGAGAAGAAGATACCCTCTACGGCCGCAAAGGCAACGAGACGCTCTGCAAAG 5926 Query 48303 CTGGC--TTC-GTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGC 48359 |||| ||| || | ||||| || | ||||| |||||||||| ||| || || Sbjct 5925 GTGGCCTTTCGGTCGCTAATCCAGCGGAGGGCCCAGTCAGCCTTCTGCTTGACGACCGGG 5866 Query 48360 ATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCT----ATCTTTAACGTAAGT 48415 || ||||| | || | |||||| || || | |||| || | |||||| Sbjct 5865 ATGGTTTCGACGGCGTCAAAGAGGAA----TTCGCGCTGCTCGGGCTCACGGATGTAAGT 5810 Query 48416 ATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTA 48475 || || | ||| ||| | |||||||| || || || || ||||| || ||||| Sbjct 5809 GTCGATGAGAAGCGAATAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTA 5750 Query 48476 AAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATT 48535 || |||| || || | ||| ||||| | || || || || | | ||||| || Sbjct 5749 GAAGCATCGAGCCTCGGCAGCCTGAACCTCGGAACTGAAACGCTCGACGAGGTTCTCGTT 5690 Query 48536 TACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTT 48595 || || ||||| |||||| || || || | || || || || | ||||| Sbjct 5689 GACGATACCATCGGAAGCAGCGAAGAAGGCGAGGACGTGGGAGATGAAGTGACGCTCGTT 5630 Query 48596 GGAAGTCAGTTTATT---CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGT 48652 | | || || || |||||||| | || || || | || | || || || || Sbjct 5629 GTCGTTGAGCTTGTTGTCCCAGTCATGAAGGTCCTTGGAGAGGTCGATCTCCTCGGCGGT 5570 Query 48653 CCAAAATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691 ||| || || ||||| || || || ||||| | ||| || Sbjct 5569 CCAGAAGGAAGCCTCGGCCTTCTTGTACATTTGCCAGAT 5531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694533478517760