Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001676635.1_202016-06-25] 15,584 sequences; 24,384,713 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq957 140 3e-28 seq17 134 1e-26 seq93 120 3e-22 seq29 118 1e-21 >seq957 Length=1833 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || || ||||||||| ||||| ||||| || Sbjct 662 CCACCACGGAGACGGAGAACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 721 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || || |||||||| |||||||| || || ||||| || || | ||| Sbjct 722 AGGGTTCGTCCATCCTCAAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCGGGAGGA 781 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| | || || | ||| | | | |||||| |||||||| Sbjct 782 ATACCCTCCTTGTCC-TGAATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 840 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | || || || ||||| ||||| ||||||||||| ||||||||| Sbjct 841 CTCGAGGGTGATGGTCTTACCGGTCAGAGTCTTTACGAAGATCTGCATG 889 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || ||||||| |||| ||||| || ||||| || || |||||||| || |||| ||| Sbjct 452 ACGAGATGCAACGTGGATTCCTTTTGGATGTTGTAATCCGAGAGGGTTCGGCCGTCTTCG 511 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||| || || || || |||||||| ||||| | ||||| || ||||| ||| || Sbjct 512 AGCTGCTTTCCAGCAAAGATAAGGCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCC-TG 570 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 | || || | ||| | | | |||||| ||||| || || | || || || || Sbjct 571 GATCTTGGCCTTAACATTGTCGATAGTGTCCGAGGACTCGACTTCGAGAGTAATGGTCTT 630 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| ||||| || || |||||||| Sbjct 631 GCCGGTCAAGGTCTTGACAAAGATCTGCAT 660 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| || || || || || || |||||||||||||| || || || || Sbjct 206 CCGCCACGAAGACGCAAAACAAGGTGAAGAGTACTCTCCTTCTGAATATTGTAATCAGAC 265 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || | ||| || || || || |||| ||||| ||||| | ||| Sbjct 266 AGAGTTCGTCCATCCTCCAACTGTTTACCAGCAAAAATCAATCGCTGCTGGTCAGGAGGA 325 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||||| ||| | || || | || | | | ||||| || || || Sbjct 326 ATACCTTCCTTGTCC-TGAATCTTGGCCTTGACATTGTCAATCGTGTCCGAAGATTCGAC 384 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || || |||||||| || || |||||||| Sbjct 385 TTCCAAAGTGATGGTCTTTCCTGTGAGCGTCTTGACAAAGATCTGCAT 432 >seq17 Length=97802 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | || ||||||| ||| ||||||||||||||| |||||||| Sbjct 47681 CCGCCACGAAGACGGAGGACAAGATGCAAGGTGGACTCCTTCTGAATGTTGTAGTCGGAA 47622 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || || ||||||||||| || || || |||||||| ||||| | |||| Sbjct 47621 AGGGTACGGCCATCTTCAAGCTGCTTGCCTGCAAAGATAAGGCGCTGCTGGTCAGGGGGA 47562 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||| ||| ||| | || || | |||| | | | ||||| || || || Sbjct 47561 ATACCCTCCTTATCC-TGAATCTTGGCCTTAACGTTGTCGATGGTGTCAGAGGATTCGAC 47503 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || |||| ||||| ||||| || ||||| Sbjct 47502 CTCAAGAGTGATAGTCTTGCCGGTCAAAGTCTTGACGAAGATTTGCAT 47455 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || || || || ||| ||| ||||| ||||| ||||| ||| Sbjct 47453 CCACCACGGAGGCGGAGAACAAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCCGAG 47394 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || ||||||||||| || ||||| || || ||||| || || | || Sbjct 47393 AGAGTGCGGCCATCCTCGAGCTGCTTACCAGCGAAGATGAGTCGCTGCTGATCAGGTGGG 47334 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| || | || || | ||| | | | ||||| ||||| || Sbjct 47333 ATGCCTTCCTTGTCC-TGGATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGGACTCGAC 47275 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || || || ||||| || || |||||||| Sbjct 47274 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 47227 >seq93 Length=51913 Score = 120 bits (132), Expect = 3e-22 Identities = 167/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || || || || ||| ||||||||| ||||| || || ||| Sbjct 49152 CCACCACGAAGGCGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAG 49093 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || ||||||||||||||||| || || || ||||| || || | |||| Sbjct 49092 AGGGTGCGACCATCTTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCAGGGGGA 49033 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | || ||||||||| ||| || ||| || | || | ||||| ||||| | Sbjct 49032 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCG--ATGGTGTCCGAAGACTCGA 48975 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||| | || || || |||||||| || || || || || |||||||| || Sbjct 48974 CCTCGAGGGTGATGGTCTTACCCGTGAGGGTTTTAACAAAGATCTGCATCTT 48923 >seq29 Length=82580 Score = 118 bits (130), Expect = 1e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || || ||||||||| ||||| ||||| ||| Sbjct 51989 CCACCACGGAGACGGAGGACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAG 52048 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| ||||||||||| |||||||| || || ||||| ||||| | ||| Sbjct 52049 AGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCGGGGGGG 52108 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| || | || || | ||| | | | |||||| |||||||| Sbjct 52109 ATACCCTCCTTGTCC-TGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 52167 Query 41815 CTCCACCGTTATCGTTTTACCCGT 41838 ||| | || || || ||||| || Sbjct 52168 CTCAAGGGTGATGGTCTTACCTGT 52191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462213943180800