Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq97 165 1e-35 seq544 109 7e-19 >seq97 Length=49960 Score = 165 bits (182), Expect = 1e-35 Identities = 445/678 (66%), Gaps = 2/678 (0%) Strand=Plus/Minus Query 53996 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 54055 || ||||| | |||||| || |||| | || || | ||||| |||||||| |||| | Sbjct 18474 GGGCACATGAGCGACCATTCGCCGTTCTGCTCAACCCTCTTCATGAAGAGATCGGGAACC 18415 Query 54056 CAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 54115 || ||||| || || || | || | | ||| || || || ||||| | Sbjct 18414 CAGAGAGCGTAGAAGAGTTCACGGGCACGAACTTCTTCCTTACCGTGGTTCTTGCGCAAG 18355 Query 54116 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGC 54175 ||||||||| | | | ||| || ||||| || || | ||| |||| | | || || Sbjct 18354 TCGAGGAACTCAAAGACATCCGAGTGCCAAGGCTCAATGTAGATGGCAAAGGCACCGGGA 18295 Query 54176 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 54235 || ||||| || ||||| || | ||| | |||||||| || | || | | ||| ||| Sbjct 18294 CGCTTGTTACCACCCTGGTCGACGTAACGGGCGGTGTTGTTGAAGACACGAAGCATGGGA 18235 Query 54236 ATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTA 54295 | ||||| ||| |||| ||||| |||| || || ||| | | ||||| | Sbjct 18234 ACGATACCGTTGCTGACACCGTTGGTGCCGGCAATGTACGAGCCAGTACCTCGAATGC-A 18176 Query 54296 CTAATTGAT-AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 54354 | | || | | ||| || || || || | || ||||| | || || || | || Sbjct 18175 GTGAATGTTCAAACCAATGCCGCCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGT 18116 Query 54355 ATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG 54414 || || ||||| || || |||||| ||||| || || |||||| || | || Sbjct 18115 GTCGTAAATGCCATCGATCGAGTCATCCTTCATGGCAACAAGGAAACAGGACGAGAGCTG 18056 Query 54415 GTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA 54474 || | ||| || || || || | ||| || || ||||| ||||| | |||| || Sbjct 18055 AGGATGGGGAGTGCCAGCGTTGAAGAGGGTTGGCGAGGCGTGAGTAAAGTACTTTTGCGA 17996 Query 54475 AAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGAC 54534 | || ||||| ||||||||||| || || ||| ||||| || || ||||| Sbjct 17995 CATGAGGTTGTAAGTCTCGATAGCACTCTCGATGTCCTGGCCGTGAATACCAACAGCGAC 17936 Query 54535 ACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGA 54594 |||||| | ||||||||| || | ||| | | |||| ||| || ||||||||||| Sbjct 17935 ACGCATGAGCATGTGCTGGGGACGCTCAGCAACCTTGCCGTTGATGCGGAGCAAGTAGGA 17876 Query 54595 TTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAAC 54654 || | ||| || || || ||| ||||||| ||||| || ||||| || ||| | Sbjct 17875 ACGCTCGAGAGTCTTGAAGCCGAAAAAGTTGTAGTGGAAGTCGCGCTCGTAGATGATAGC 17816 Query 54655 TGAGTTGAGTTTATCCTT 54672 |||| || | ||||| Sbjct 17815 CGAGTCAAGCTGGTCCTT 17798 >seq544 Length=9533 Score = 109 bits (120), Expect = 7e-19 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || ||||| ||| ||| ||||||||||| | || | |||||||| || ||||| Sbjct 3452 CAGGCGAAGTCGGTGTGAAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGA 3511 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254 |||||||| || |||||||| || ||||| || || || || || || || || ||||| Sbjct 3512 CCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAAGAACCGGAGAAGAAG 3571 Query 24255 ATTCCTTCTACTGCCGCAAAGGCAA 24279 || || ||||| ||||||||||||| Sbjct 3572 ATACCCTCTACGGCCGCAAAGGCAA 3596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593652973204560