Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq97 129 1e-24 >seq97 Length=49960 Score = 129 bits (142), Expect = 1e-24 Identities = 341/519 (66%), Gaps = 9/519 (2%) Strand=Plus/Plus Query 248893 CAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTC 248952 ||||||||| | ||||| || ||||| || |||||| | ||||| ||||| | || Sbjct 17918 CAGCACATGCTCATGCGTGTCGCTGTTGGTATTCACGGCCAGGACATCGAGAGTGCTATC 17977 Query 248953 GAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAAC 249012 ||||| |||| | ||| || | | || || ||| | || || ||||||||| Sbjct 17978 GAGACTTACAACCTCATGTCGCAAAAGTACTTTACTCACGCCTCGCCAACCCTCTTCAAC 18037 Query 249013 GCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCT 249072 || || || | | |||||| || || || ||| |||||||| | || ||||| Sbjct 18038 GCTGGCACTCCCCATCCTCAGCTCTCGTCCTGTTTCCTTGTTGCCATGAAGGATGACTCG 18097 Query 249073 GTCGACGGCATTTATGACACGCTTAAACAGAC---GGCGAAGATTTCTAAATTCGCGGGC 249129 |||| |||||||| ||||| || | |||| || | ||| || || ||| ||| Sbjct 18098 ATCGATGGCATTTACGACACCCTCA---AGACCTGTGCCATGATCTCCAAGACCGCCGGC 18154 Query 249130 GGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAAT 249189 || || ||| | | | | ||| |||| | || |||||||| || || || Sbjct 18155 GGCATTGGTTTGAACATTCACTGCATTCGAGGTACTGGCTCGTACATTGCCGGCACCAAC 18214 Query 249190 GGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATC 249249 || ||||| | |||||||| ||| | ||||| ||| | ||||||| | | | || Sbjct 18215 GGTGTCAGCAACGGTATCGTTCCCATGCTTCGTGTCTTCAACAACACCGCCCGTTACGTC 18274 Query 249250 AACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCC 249306 |||||| || | || || | || ||||| || | || |||||| | Sbjct 18275 GACCAGGGTGGTAACAAGCGTCCCGGTGCCTTTGCCATCTACATTGAGCCTTGGCACTCG 18334 Query 249307 GATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGT 249366 ||| | || |||||||| |||||| |||||| |||| || || | | || ||| Sbjct 18335 GATGTCTTTGAGTTCCTCGACTTGCGCAAGAACCACGGTAAGGAAGAAGTTCGTGCCCGT 18394 Query 249367 GACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATG 249405 || |||||||||| || ||||| |||| | |||||| Sbjct 18395 GAACTCTTCTACGCTCTCTGGGTTCCCGATCTCTTCATG 18433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073639183176896