Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq97 165 1e-35 seq544 127 3e-24 >seq97 Length=49960 Score = 165 bits (182), Expect = 1e-35 Identities = 445/678 (66%), Gaps = 2/678 (0%) Strand=Plus/Minus Query 63234 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63293 || ||||| | |||||| || |||| | || || | ||||| |||||||| |||| | Sbjct 18474 GGGCACATGAGCGACCATTCGCCGTTCTGCTCAACCCTCTTCATGAAGAGATCGGGAACC 18415 Query 63294 CAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63353 || ||||| || || || | | | | ||| || || || ||||| | Sbjct 18414 CAGAGAGCGTAGAAGAGTTCACGGGCACGAACTTCTTCCTTACCGTGGTTCTTGCGCAAG 18355 Query 63354 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63413 ||||||||| | | | ||| || ||||| || || | ||| ||||| | | || || Sbjct 18354 TCGAGGAACTCAAAGACATCCGAGTGCCAAGGCTCAATGTAGATGGCAAAGGCACCGGGA 18295 Query 63414 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63473 || ||||| || ||||| || | ||| | |||||||| || | || | | ||| ||| Sbjct 18294 CGCTTGTTACCACCCTGGTCGACGTAACGGGCGGTGTTGTTGAAGACACGAAGCATGGGA 18235 Query 63474 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTA 63533 | |||||||| | ||| ||||| |||| || || ||| | | ||||| | Sbjct 18234 ACGATACCGTTGCTGACACCGTTGGTGCCGGCAATGTACGAGCCAGTACCTCGAATGC-A 18176 Query 63534 CTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 63592 | | || | | ||| || || || || | || ||||| | || || || | || Sbjct 18175 GTGAATGTTCAAACCAATGCCGCCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGT 18116 Query 63593 GTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTG 63652 ||| || ||||| || || ||||| ||||| || || |||||| || | || Sbjct 18115 GTCGTAAATGCCATCGATCGAGTCATCCTTCATGGCAACAAGGAAACAGGACGAGAGCTG 18056 Query 63653 GTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA 63712 || | | ||| || || || || | ||| || || ||||| ||||| | |||| || Sbjct 18055 AGGATGGGGAGTGCCAGCGTTGAAGAGGGTTGGCGAGGCGTGAGTAAAGTACTTTTGCGA 17996 Query 63713 AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGAC 63772 | || ||||| ||||| ||||| || || ||| ||||| || || ||||| Sbjct 17995 CATGAGGTTGTAAGTCTCGATAGCACTCTCGATGTCCTGGCCGTGAATACCAACAGCGAC 17936 Query 63773 ACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGA 63832 |||||| | ||||||||| || | ||| ||| ||| ||| || | ||||||||| Sbjct 17935 ACGCATGAGCATGTGCTGGGGACGCTCAGCAACCTTGCCGTTGATGCGGAGCAAGTAGGA 17876 Query 63833 TTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAAC 63892 || | ||| || || || ||| ||||||| ||||| || ||||| || ||| | Sbjct 17875 ACGCTCGAGAGTCTTGAAGCCGAAAAAGTTGTAGTGGAAGTCGCGCTCGTAGATGATAGC 17816 Query 63893 CGAATTGAGCTTATCCTT 63910 ||| | |||| ||||| Sbjct 17815 CGAGTCAAGCTGGTCCTT 17798 >seq544 Length=9533 Score = 127 bits (140), Expect = 3e-24 Identities = 368/562 (65%), Gaps = 16/562 (3%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| ||| ||| ||||||||||| | || | ||||| || || ||||| Sbjct 3452 CAGGCGAAGTCGGTGTGAAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGA 3511 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 |||||||| || |||||||| || ||||| || || || ||||| || ||||| |||||| Sbjct 3512 CCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAAGAACCGGAGAAGAAG 3571 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC---GCTGTCATGT 33758 || || ||||| || |||||||||| || | |||| || | ||| | ||| Sbjct 3572 ATACCCTCTACGGCCGCAAAGGCAACGAGACGCTCTGCAAAGGTGGCCTTTCGGTCGCTA 3631 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 ||||| | ||||| || ||||||| || || || || ||||| | ||| | | Sbjct 3632 ATCCAGCGGAGGGCCCAGTCAGCCTTCTGCTTGACGACCGGGATGGTTTCGACGGCGTCA 3691 Query 33819 AAGAGATAGtttttttCATTACT----ATCTTTAACATAAGTATCGATCAAAAGACTATA 33874 ||||| | || | | || || | ||||| ||||| | ||| ||| Sbjct 3692 AAGAGGAA----TTCGCGCTGCTCGGGCTCACGGATGTAAGTGTCGATGAGAAGCGAATA 3747 Query 33875 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33934 | || || || ||||| || || ||||| || |||||||| |||| |||||||| Sbjct 3748 GGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGC 3807 Query 33935 AATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGC 33994 | ||| || || | || || || || | | || || || || || ||||| || Sbjct 3808 AGCCTGAACCTCGGAACTGAAACGCTCGACGAGGTTCTCGTTGACGATACCATCGGAAGC 3867 Query 33995 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATT-- 34051 || || || || | || || || || | |||| || ||| || || || Sbjct 3868 AGCGAAGAAGGCGAGGACGTGGGAGATGAAGTGACGCTCGT-TGTCGTTGAGCTTGTTGT 3926 Query 34052 -CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 34110 ||| |||| | || || || | || | || || | ||||| || || ||||| | Sbjct 3927 CCCAGTCATGAAGGTCCTTGGAGAGGTCGATCTCCTCGGCGGTCCAGAAGGAAGCCTCGG 3986 Query 34111 CCTTTTTATACATATTCCAGAT 34132 |||| || ||||| | |||||| Sbjct 3987 CCTTCTTGTACATTTGCCAGAT 4008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629744800958160