Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq97 154 2e-32 seq544 136 6e-27 >seq97 Length=49960 Score = 154 bits (170), Expect = 2e-32 Identities = 613/955 (64%), Gaps = 10/955 (1%) Strand=Plus/Minus Query 79891 CCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATA 79950 || || || |||| || ||||| | |||||| || || | | || || | ||||| Sbjct 18489 CCGGGGCACTCGTTGGGGCACATGAGCGACCATTCGCCGTTCTGCTCAACCCTCTTCATG 18430 Query 79951 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 80010 |||||||| |||| ||| ||||| || || || | || | | || || || || Sbjct 18429 AAGAGATCGGGAACCCAGAGAGCGTAGAAGAGTTCACGGGCACGAACTTCTTCCTTACCG 18370 Query 80011 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 80070 ||||| | ||||||||| | | | ||| || ||||| || || | ||| ||| Sbjct 18369 TGGTTCTTGCGCAAGTCGAGGAACTCAAAGACATCCGAGTGCCAAGGCTCAATGTAGATG 18310 Query 80071 GCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 80130 || | | || || || ||||| || ||||| || | ||| | |||||||| || | Sbjct 18309 GCAAAGGCACCGGGACGCTTGTTACCACCCTGGTCGACGTAACGGGCGGTGTTGTTGAAG 18250 Query 80131 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 80190 || | | ||| |||| ||||| ||| ||| ||||| |||| || || ||| Sbjct 18249 ACACGAAGCATGGGAACGATACCGTTGCTGACACCGTTGGTGCCGGCAATGTACGAGCCA 18190 Query 80191 CTGGCACGAATATTACTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 80249 | | ||||| | | | || | | ||| || || || || | || ||||| | || Sbjct 18189 GTACCTCGAATGC-AGTGAATGTTCAAACCAATGCCGCCGGCGGTCTTGGAGATCATGGC 18131 Query 80250 GCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAA 80309 || || | || || || ||||| || || ||||| ||||| || || || Sbjct 18130 ACAGGTCTTGAGGGTGTCGTAAATGCCATCGATCGAGTCATCCTTCATGGCAACAAGGAA 18071 Query 80310 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 80369 |||| || | || || | ||| || || || || | ||| || || ||||| || Sbjct 18070 ACAGGACGAGAGCTGAGGATGGGGAGTGCCAGCGTTGAAGAGGGTTGGCGAGGCGTGAGT 18011 Query 80370 AAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATG 80429 ||| | |||| |||| || ||||| ||||| ||||| || || ||| || Sbjct 18010 AAAGTACTTTTGCGACATGAGGTTGTAAGTCTCGATAGCACTCTCGATGTCCTGGCCGTG 17951 Query 80430 AATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTAT 80489 ||| || || ||||||||||| | ||||||||| || | ||| | | |||| || || Sbjct 17950 AATACCAACAGCGACACGCATGAGCATGTGCTGGGGACGCTCAGCAACCTTGCCGTTGAT 17891 Query 80490 TTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 80549 | |||||| || || | ||| || || || ||| ||||||| ||||| || Sbjct 17890 GCGGAGCAAGTAGGAACGCTCGAGAGTCTTGAAGCCGAAAAAGTTGTAGTGGAAGTCGCG 17831 Query 80550 TTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTGAT 80609 ||||| || ||| |||||| || | ||||| | | | || || | |||| Sbjct 17830 CTCGTAGATGATAGCCGAGTCAAGCTGGTCCTTGTGCTCCATGACGACCTTGTAGGTGGC 17771 Query 80610 ACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTC 80669 | || || || || ||| | || || || || || ||||| | | | || |||| Sbjct 17770 ATCAGAGATCATAGGGCTGTGTCTGCCGTTCTTGGGGTTGACATACTCGTACAAGTCCTG 17711 Query 80670 CATCACTTCACTAAATAGttttt--ttGTTTCCTTGTGTAGATTTGAT-ACGGCTATTCT 80726 | |||| || | |||| || | || |||||||| | | ||| | | ||| || | Sbjct 17710 GACGACTTGGCTGA--AGTTCTTGCTAGTCTCCTTGTGCA-AGTTGCTGATGGCAATACG 17654 Query 80727 GGCGGCTAAAATGGCATAATCTGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGGCTG 80785 || || | | |||||| ||||| ||| ||| || | || ||| || | ||||| | Sbjct 17653 CGCAGCAAGGACGGCATAGTCTGGGTGTGTTGTTGT-CTTGTAGGCGGCAGTCTCGGCAG 17595 Query 80786 CCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTT 80840 | || |||| | ||||| || || || || | || || || | ||| || || Sbjct 17594 CAAGGTTGTCAAGCTCTACGGTGGTGACACCCTCGTAGATACCGTCGATGACTTT 17540 >seq544 Length=9533 Score = 136 bits (150), Expect = 6e-27 Identities = 368/561 (66%), Gaps = 14/561 (2%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| ||| ||| ||||||||||| | || || |||||||| || ||||| Sbjct 3452 CAGGCGAAGTCGGTGTGAAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGA 3511 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 |||||||| || |||||||| || ||||| || || || || || || || || |||||| Sbjct 3512 CCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAAGAACCGGAGAAGAAG 3571 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGC---GCTGTCATGT 50136 || || ||||| || ||||||||||| || | |||| || | |||| | ||| Sbjct 3572 ATACCCTCTACGGCCGCAAAGGCAACGAGACGCTCTGCAAAGGTGGCCTTTCGGTCGCTA 3631 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196 ||||| | ||||| || ||||||| || || || || ||||| | ||| | | Sbjct 3632 ATCCAGCGGAGGGCCCAGTCAGCCTTCTGCTTGACGACCGGGATGGTTTCGACGGCGTCA 3691 Query 50197 AAGAGATAGtttttttCATTACT----ATCTTTAACATAAGTATCGATCAAAAGACTATA 50252 ||||| | || | | || || | ||||| ||||| | ||| ||| Sbjct 3692 AAGAGGAA----TTCGCGCTGCTCGGGCTCACGGATGTAAGTGTCGATGAGAAGCGAATA 3747 Query 50253 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 50312 | || || || ||||| || || ||||| || |||||||| |||| |||||||| Sbjct 3748 GGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGC 3807 Query 50313 AATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGC 50372 | ||| || || | || || || || | | || || || || || || || || Sbjct 3808 AGCCTGAACCTCGGAACTGAAACGCTCGACGAGGTTCTCGTTGACGATACCATCGGAAGC 3867 Query 50373 TGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATT--- 50429 || || || || | || || || || || |||||| | || || || Sbjct 3868 AGCGAAGAAGGCGAGGACGTGGGAGATGAAGTGACGCTCGTTGTCGTTGAGCTTGTTGTC 3927 Query 50430 CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGC 50489 ||| |||| | || || || | || | || || | ||||| || || ||||| || Sbjct 3928 CCAGTCATGAAGGTCCTTGGAGAGGTCGATCTCCTCGGCGGTCCAGAAGGAAGCCTCGGC 3987 Query 50490 CTTTTTATACATATTCCAGAT 50510 ||| || ||||| | |||||| Sbjct 3988 CTTCTTGTACATTTGCCAGAT 4008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718185777105080