Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq430 109 6e-19 >seq430 Length=15258 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || ||||| || |||| ||| | ||| | || ||||| ||||| ||||||||||| Sbjct 1437 CCACCTCGCAATCGCAGAACGAGATGCAACGTGGATTCCTTTTGGATGTTGTAATCCGAG 1378 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||||||| || || |||||| |||| ||||| ||||| || || || Sbjct 1377 AGGGTTCGGCCGTCTTCGAGCTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCAGGGGGA 1318 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| || || || || || | | || | ||||||| || || ||| Sbjct 1317 ATGCCTTCCTTATCCTGGATCTTGGCCTTAACATTGTCGATAGTGTCCGAGGACTCGACT 1258 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | |||||||||||||| || || || || || |||||| Sbjct 1257 TCGAGAGTAATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCATA 1210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506955795473040