Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq544 196 7e-45 seq97 107 3e-18 >seq544 Length=9533 Score = 196 bits (216), Expect = 7e-45 Identities = 390/563 (69%), Gaps = 16/563 (3%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| ||||| |||| ||||| ||||| | ||| ||| |||| || Sbjct 4008 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATCGACCTC 3949 Query 125079 TCCAAGGACCTGTACGATTGGGAGA-CTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137 ||||||||||| | || ||||| | | | | || ||| ||||| | || || || Sbjct 3948 TCCAAGGACCTTCATGACTGGGACAACAAGCTCAACGACAAC-GAGCGTCACTTCATCTC 3890 Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACAC 125196 ||| | | |||||||| || | |||||||| ||||||||||| || || || || | Sbjct 3889 CCACGTCCTCGCCTTCTTCGCTGCTTCCGATGGTATCGTCAACGAGAACCTCGTCGAG-C 3831 Query 125197 GATTCTCTCAAGAG-TTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCAT 125254 | ||| | ||| || | | || |||| ||| ||||| ||||| ||||| ||||| Sbjct 3830 GTTTCAGTTCCGAGGTTCAGGCTGCC-GAGGC-TCGATGCTTCTACGGTTTCCAGATCAT 3773 Query 125255 GATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC 125314 ||| |||||| | ||||| || | || || || || |||| ||||| || || || Sbjct 3772 GATGGAGAACATCCACTCCGAGACCTATTCGCTTCTCATCGACACTTACATCCGTGAGCC 3713 Query 125315 ---GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCG-TCTATACGTAAAA 125370 ||| || || | |||||| |||| |||| || | ||| || | | | || Sbjct 3712 CGAGCAGCGCGAATTC---CTCTTTGACGCCGTCGAAACCATCCCGGTCGTCAAGCAGAA 3656 Query 125371 AGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGG 125430 |||| | |||| | || ||||| ||| ||| | | | || || | || | Sbjct 3655 -GGCTGACTGGGCCCTCCGCTGGATTAGCGACCGAAAGGCCACCTTTGCAGAGCGTCTCG 3597 Query 125431 TGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGC 125490 | || || || ||||||||||| |||||||| || ||| ||| || | ||||| |||| Sbjct 3596 TTGCCTTTGCGGCCGTAGAGGGTATCTTCTTCTCCGGTTCTTTCGCCTCTATCTTCTGGC 3537 Query 125491 TCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACG 125550 |||||||||| || ||||||||||| || || | |||||| | || || || |||| Sbjct 3536 TCAAGAAGCGTGGTCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCCCGCGACG 3477 Query 125551 AGGGCCTACACTGTGACTTTGCC 125573 |||| || ||| ||||| ||| Sbjct 3476 AGGGTCTTCACACCGACTTCGCC 3454 >seq97 Length=49960 Score = 107 bits (118), Expect = 3e-18 Identities = 149/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 98038 TCTACAAGACTGTCTGGGAGAT-TCCGACCAAGACGCTGATCGATATGGCTGCCGACAGA 98096 ||||||||||||| |||||||| ||| | ||| | | ||||| ||||| || ||| || Sbjct 19455 TCTACAAGACTGTTTGGGAGATCTCCCA-GAAGGCTATCATCGACATGGCCGCTGACCGA 19513 Query 98097 GGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGT 98156 |||| | |||| |||| ||||||| |||| | || | | | ||||| | | || Sbjct 19514 GGTGCTTTCATTTGCCAGTCTCAATCGCTCAACATCCACTTGTCGGCTCCCACTTTCGGT 19573 Query 98157 CGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTAT 98216 | |||||||||| ||||| |||| ||||| ||||| |||||||| || | ||||| Sbjct 19574 CAGTTGACTTCGATGCACTTCTACGGTTGGAAGAAGGGTCTCAAGACCGGTACCTACTAC 19633 Query 98217 CTGAGAACAAAGTCGGCCACCAATGC 98242 || | || ||| | || |||| || Sbjct 19634 CTTCGTACCAAGCCAGCATCCAACGC 19659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740973542819720