Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq97 329 8e-85 >seq97 Length=49960 Score = 329 bits (364), Expect = 8e-85 Identities = 1160/1795 (65%), Gaps = 40/1795 (2%) Strand=Plus/Plus Query 363389 TTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTG 363448 ||||||| | ||||| | ||| |||||| | || ||||| || | ||| || Sbjct 17850 TTTTCGGCTTCAAGACTCTCGAGCGTTCCTACTTGCTCCGCATCAACGGCAAGGTTGCTG 17909 Query 363449 AACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATG 363508 | || || ||||| ||| | |||||||| ||| ||||||| || ||| ||| | || Sbjct 17910 AGCGTCCCCAGCACATGCTCATGCGTGTCGCTGTTGGTATTCACGGCCAGGACATCGAGA 17969 Query 363509 CCGCGATTGAAACATATAAGCTTCTAAGT-GCTCGTGTA-TTCACGCACGCCACGCCAAC 363566 || || || || || || || | || || ||| || || |||||| ||||||| Sbjct 17970 GTGCTATCGAGACTTACAACCTCAT--GTCGCAAAAGTACTTTACTCACGCCTCGCCAAC 18027 Query 363567 AATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAA 363626 | | ||| ||||| |||| |||| ||| | || || || || ||| | ||||| Sbjct 18028 CCTCTTCAACGCTGGCACTCCCCATCCTCAGCTCTCGTCCTGTTTCCTTGTTGCCATGAA 18087 Query 363627 GGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAA 363686 ||| || || ||||| || || | ||||| || |||| ||||| | || ||||||| Sbjct 18088 GGATGACTCGATCGATGGCATTTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGAC 18147 Query 363687 TGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGCG 363745 || ||||| |||||| | || ||| |||| | || | || ||||| || Sbjct 18148 CGCCGGCGGCATTGGTTTGAACATTCACTGCATTCGAGGTACTGGCTCGT-ACATTGCCG 18206 Query 363746 GCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGA 363805 |||| || | || || | ||||||||||||||||| || |||| || || Sbjct 18207 GCACCAACGGTGTCAGCAACGGTATCGTTCCCATGCTTCGTGTCTTCAACAACACCGCCC 18266 Query 363806 GGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTC 363865 | ||||||||||||||||| ||||| || || ||||| || || | |||||| Sbjct 18267 GTTACGTCGACCAGGGTGGTAACAAGCGTCCCGGTGCCTTTGCCATCTACATTGAGCCTT 18326 Query 363866 ATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGC 363925 || | ||| | |||||||| || || | || || ||| || || || ||| | | Sbjct 18327 GGCACTCGGATGTCTTTGAGTTCCTCGACTTGCGCAAGAACCACGGTAAGGAAGAAGTTC 18386 Query 363926 GTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGG 363985 |||| ||||| || ||||| || || |||||| | || | || |||||| | || ||| Sbjct 18387 GTGCCCGTGAACTCTTCTACGCTCTCTGGGTTCCCGATCTCTTCATGAAGAGGGTTGAG- 18445 Query 363986 CAGGTAA----GAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTA 364041 ||| || |||| |||| ||| | ||||| |||| || || ||||| | || Sbjct 18446 CAG--AACGGCGAAT-GGTCGCTCATGTGCCCCAACGAGTGCCCCGGTCTCGCTGACTGC 18502 Query 364042 TGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGT--- 364098 | ||||| || | || ||| ||||| || || | || || |||| Sbjct 18503 TACGGTGAGGAGTTTGAGCGTCTCTACGAGCGTTACGAGGCTGAAGG------TCGTTCC 18556 Query 364099 AAG---ACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACA 364155 ||| || | || |||||||| |||| |||||| | || ||||||| ||||| Sbjct 18557 AAGCGCACCGTCAAGGCTCAGAAGCTCTGGTACGCCATCCTCGAGTCGCAGACCGAGACT 18616 Query 364156 GGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTT 364215 || | |||| || | ||||| || | ||||||||||||||||||| || |||| Sbjct 18617 GGTAACCCCTTCATCCTCTACAAGGACGCTGCCAACCGCAAGTCCAACCAGAAGAACCTC 18676 Query 364216 GGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAG 364275 ||||| || || |||| | || || ||||| || || |||| |||||||| ||| Sbjct 18677 GGTACTATCAAGTGCTCCAACTTGTGCACTGAGATCATCGAGTACAGTGCTCCCGATGAG 18736 Query 364276 ACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGATGGTAC---- 364331 ||| || || |||||||| || ||||| ||||| | || | | || || Sbjct 18737 GTTGCTGTTTGCAACCTTGCCTCCATCGCTCTTCCCACCTTCATCGACCCTGTCACCAAG 18796 Query 364332 --TTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCA--ATCTCG-AC 364386 | ||| || ||| | | | || || || | |||| |||| | || | || Sbjct 18797 GTCTACGACTACAAGCGTTTGCACGAGGTTGCC---AAGGCTATCTGCAAGAACTTGAAC 18853 Query 364387 AAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCAT 364446 ||| | ||||||| || || || || || || || |||||||| |||||||| Sbjct 18854 AAGATCATCGACATCAACTACTACCCTGTTGAGGAGGCTCGTCGTTCTAACATGCGTCAC 18913 Query 364447 CGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCA 364506 ||||| || ||| | ||||| ||||| || || || | || ||||| | || Sbjct 18914 CGCCCTATCGGTATCGGTGTTCAGGGTCTTGCCGATGCCTTCATGATCATGGGTTACGCC 18973 Query 364507 TTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCC 364566 || || ||||| || |||||| | || ||||||| || || || || |||| Sbjct 18974 TTCGAATCGCCCGAGGCTCGTCGATTGAACGTCCAGATCTTCGAGACCATCTACCATGCC 19033 Query 364567 GC-AATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGG 364625 || ||| | ||||| || ||||| || | || | ||| || || | || Sbjct 19034 GCTCTTGAGCG-ATCGTGCGAGTTGGCTCAAGAGCACGGCACCTACGAGACCTACGCCGG 19092 Query 364626 GTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCG 364685 || ||| ||| ||||| || |||||| || | ||| |||||| || || | | Sbjct 19093 CTCTCCTGCTTCCCAGGGTGAACTCCAGTACGACATGTGGGGTGTCACTCCTTCCGATCT 19152 Query 364686 ATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGT 364745 ||| |||||| || || |||| | ||||| ||| |||||||| ||| | Sbjct 19153 TTGGGACTGGGCTAGCCTCAAGGCCAAGATCGCCAAGCACGGTCTCCGCAACTCGCTCTT 19212 Query 364746 TACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGA 364805 || |||||||| || || ||||| |||||| | || |||||| || ||||| Sbjct 19213 GCTCGCTCCCATGCCTACCGCATCTACAAGTCAGATCTTGGGTTTCAACGAATGTTTCGA 19272 Query 364806 ACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAA 364865 || | || ||| | || || || || || || | || ||||| | ||| || || Sbjct 19273 GCCCTACACCTCCAACATCTACTCTCGTCGTGTCCTCGCTGGTGAATTCCAGGTCGTCAA 19332 Query 364866 TAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTA 364925 | | || || || || | || ||||| |||| ||||||||| Sbjct 19333 CCCTTGGTTGCTCCGCGAACTCGTTGAGCAGGGATTGTGGAACGACACAATGAAGAACCG 19392 Query 364926 TATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCC 364985 ||||||||| |||||| | |||||| |||| || | || || | | ||| Sbjct 19393 TATCATCGCTCACGGTGGTTCCATCCAGAACGTTCCTGGTATCCCCGACCGTATCAAGAA 19452 Query 364986 TATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCG 365045 | ||||| || || ||||| || ||| | || |||| || ||||| || || || Sbjct 19453 GCTCTACAAGACTGTTTGGGAGATCTCCCAGAAGGCTATCATCGACATGGCCGCTGACCG 19512 Query 365046 CGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGC 365105 |||||||| || || ||| || ||| | ||| | | || | || || | || Sbjct 19513 AGGTGCTTTCATTTGCCAGTCTCAATCGCTCAACATCCACTTGTCGGCTCCCACTTTCGG 19572 Query 365106 CAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGGTGCC 365160 || | || || ||||| |||||||| ||||| ||||| ||||| ||| || Sbjct 19573 TCAGTTGACTTCGATGCACTTCTACGGTTGGAAGAAGGGTCTCAAGACCGGTACC 19627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303199182331154