Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq430 127 2e-24 seq245 113 4e-20 seq29 102 8e-17 seq97 91.5 1e-13 seq544 87.8 2e-12 seq23 86.0 6e-12 >seq430 Length=15258 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | |||||||||||| || |||||||| || Sbjct 1209 CCACCACGGAGACGGAGAACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 1150 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| |||||||| || ||| | || | ||||||||| || ||||| Sbjct 1149 AGGGTTCGTCCATCCTCAAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCGGGAGGA 1090 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||||| | || | || |||| ||||| | Sbjct 1089 ATACCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 1030 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGAC 131237 |||| ||| | ||| |||||||| ||||| |||||||| ||||||||||| Sbjct 1029 TCGAGGGTGATGGTCTTACCGGTCAGAGTCTTTACGAAGATCTGCATGAC 980 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| ||||| ||||| || | ||| | || || |||||||| ||||||||||| Sbjct 1437 CCACCTCGCAATCGCAGAACGAGATGCAACGTGGATTCCTTTTGGATGTTGTAATCCGAG 1378 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||| || |||||||| || || |||| | |||||||||||| || || Sbjct 1377 AGGGTTCGGCCGTCTTCGAGCTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCAGGGGGA 1318 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || ||| || ||| | | || | ||| || | |||||||| Sbjct 1317 ATGCCTTCCTTATCCTGGATCTTGGCCTTAACATTGTCGATAGTGTCCGAGGACTCGACT 1258 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| |||| ||| || ||||| | || || || || |||||||| Sbjct 1257 TCGAGAGTAATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 1211 >seq245 Length=26962 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | || | ||| |||||||| || ||||||||||| Sbjct 24118 CCACCACGAAGGCGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAG 24059 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || ||||||||||| || |||| | ||||||||| || || || Sbjct 24058 AGGGTGCGACCATCTTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCAGGGGGA 23999 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||| | || | || || | ||||||| Sbjct 23998 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCGACC 23939 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| ||||| || || ||||| || || |||||||| Sbjct 23938 TCGAGGGTGATGGTCTTACCCGTGAGGGTTTTAACAAAGATCTGCAT 23892 >seq29 Length=80376 Score = 102 bits (112), Expect = 8e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | ||| |||||||| || |||||||| || Sbjct 49837 CCACCACGGAGACGGAGGACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAG 49896 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| |||||||| || ||| |||| | |||||||||||| || ||| Sbjct 49897 AGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCGGGGGGG 49956 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 49957 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 50016 Query 131188 TCGACGGTAACGGTTTTACCGGTT 131211 || | ||| | ||| ||||| ||| Sbjct 50017 TCAAGGGTGATGGTCTTACCTGTT 50040 >seq97 Length=49960 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||||||||| || || || || | |||||||| | || | ||| || ||| |||| Sbjct 19332 TTGACGACCTGGAATTCACCAGCGAGGACACGACGAGAGTAGATGTTGGAGGTGTAGGGC 19273 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || ||| | ||||| |||| ||| ||| || | |||||| |||||| || | | Sbjct 19272 TCGAAACATTCGTTGAAACCCAAGATCTGACTTGTAGATGCGGTAGGCATGGGAGCGAGC 19213 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 || | || ||||| || |||||||| ||| | |||| || || |||| ||||| Sbjct 19212 AAGAGCGAGTTGCGGAGACCGTGCTTGGCGATCTTGGCCTTGAGGCTAGCCCAGTCCCAA 19153 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTG 145272 || | || | || |||||||||||||||| Sbjct 19152 AGATCGGAAGGAGTGACACCCCACATGTCGTACTG 19118 >seq544 Length=9533 Score = 87.8 bits (96), Expect = 2e-12 Identities = 124/172 (72%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 46141 GCGACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGC 46200 || || || || |||||| | || ||||||||| || ||||| |||| || || || Sbjct 3618 GCCACCTTTGCAGAGCGTCTCGTTGCCTTTGCGGCCGTAGAGGGTATCTTCTTCTCCGGT 3559 Query 46201 AGTTTTGCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAG 46259 ||| ||| | ||||| | |||| || | || | |||||||||| || || || Sbjct 3558 TCTTTCGCCTCTATCTTCTGGCTCAAGAAGCGTGGTC-TCATGCCCGGTCTCACCTTCTC 3500 Query 46260 CAACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTC 46311 ||||||||| || || ||||||||||| || || || ||||| || || ||| Sbjct 3499 CAACGAGCTCATCTCCCGCGACGAGGGTCTTCACACCGACTTCGCCTGCCTC 3448 >seq23 Length=89368 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || | ||| | ||| |||||||| ||||||||||| ||| Sbjct 50146 CCGCCACGAAGACGGAGGACAAGATGCAAGGTGGACTCCTTCTGAATGTTGTAGTCGGAA 50205 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || || |||||||||||||| |||| | ||||||||||| || || Sbjct 50206 AGGGTACGGCCATCTTCAAGCTGCTTGCCTGCAAAGATAAGGCGCTGCTGGTCAGGGGGA 50265 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || || || || || ||| | | || | || || | ||| |||| Sbjct 50266 ATACCCTCCTTATCCTGAATCTTGGCCTTAACGTTGTCGATGGTGTCAGAGGATTCGACC 50325 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || ||||| | ||| || ||||| || ||||| Sbjct 50326 TCAAGAGTGATAGTCTTGCCGGTCAAAGTCTTGACGAAGATTTGCAT 50372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471958241220480