Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq430 123 2e-23 seq245 113 4e-20 seq23 107 2e-18 >seq430 Length=15258 Score = 123 bits (136), Expect = 2e-23 Identities = 157/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||||||| || |||| || ||||||| ||||| || Sbjct 1211 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATTACTCTCGAAGTCGAGTCCTCG 1270 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||||||||| || || ||| || ||| || || ||||| ||||| ||||||| Sbjct 1271 GACACTATCGA--CAATGTTAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACC 1328 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| |||| ||||| || || || | ||||| | || || | ||||||| Sbjct 1329 AGCAGCGTCTTATCTTTGCTGGAAAGCAGCTCGAAGACGGCCGAACCCTCTCGGATTACA 1388 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || ||||| ||||||||| | ||| | || || Sbjct 1389 ACATCCAAAAGGAATCCACGTTGCATCTCGTTCT 1422 Score = 107 bits (118), Expect = 2e-18 Identities = 142/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || ||||||| | ||||| || || || Sbjct 1439 ATGCAGATCTTTGTCAAGACGCTCACAGGAAAGACCATCACTTTGGAAGTCGAATCTTCG 1498 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || || || | || || | ||| ||||| ||||| ||||| |||||| Sbjct 1499 GACACGATTGA--CAATGTCAAGGCCAAGATTCAG-GACAAGGAAGGTATTCCTCCTGAC 1555 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | |||||||| || ||||| || || |||| || ||| || |||||| Sbjct 1556 CAGCAGCGATTGATTTTTGCTGGTAAACAGTTGGAGGATGGACGAACTCTGTCTGATTAC 1615 Query 25176 AATATTCAAAAAGA 25189 |||||||| || || Sbjct 1616 AATATTCAGAAGGA 1629 >seq245 Length=26962 Score = 113 bits (124), Expect = 4e-20 Identities = 149/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || | || ||||| ||||||| |||| || ||||| || Sbjct 23892 ATGCAGATCTTTGTTAAAACCCTCACGGGTAAGACCATCACCCTCGAGGTCGAGTCTTCG 23951 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| ||||| || || ||| || ||| ||||| ||||| ||||| ||||| | Sbjct 23952 GACACCATCGA--CAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATC 24009 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | || ||||||||||| || | ||||||| |||||| | ||||||| Sbjct 24010 AGCAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAAGATGGTCGCACCCTCTCGGATTACA 24069 Query 25177 ATATTCAAAAAGAATCCACGCTACA 25201 | || || || || ||||| || || Sbjct 24070 ACATCCAGAAGGAGTCCACCCTTCA 24094 >seq23 Length=89368 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || |||||||||||||| || | ||||| | || || || || ||| Sbjct 50372 ATGCAAATCTTCGTCAAGACTTTGACCGGCAAGACTATCACTCTTGAGGTCGAATCCTCT 50313 Query 25059 GACACTATCGA-GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| | | | || || | ||| || || || || ||||| |||||||| Sbjct 50312 GACACCATCGACAACGTTAAGGCCAAGATTCA-GGATAAGGAGGGTATTCCCCCTGACCA 50254 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| |||| ||||| ||||| || | ||||||| || || | ||| ||||| Sbjct 50253 GCAGCGCCTTATCTTTGCAGGCAAGCAGCTTGAAGATGGCCGTACCCTTTCCGACTACAA 50194 Query 25178 TATTCAAAAAGAATCCAC 25195 ||||| || || ||||| Sbjct 50193 CATTCAGAAGGAGTCCAC 50176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433279164882305