Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq23 138 1e-27 seq430 132 4e-26 seq245 132 4e-26 seq29 109 5e-19 >seq23 Length=89368 Score = 138 bits (152), Expect = 1e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || ||||| ||||| || || |||||||||| || ||| || | Sbjct 50372 ATGCAAATCTTCGTCAAGACTTTGACCGGCAAGACTATCACTCTTGAGGTCGAATCCTCT 50313 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | | || || ||||| || |||||||||||||| || || || Sbjct 50312 GACACCATCGACAACGTTAAGGCCAAGATTCAGGATAAGGAGGGTATTCCCCCTGACCAG 50253 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || ||||| ||||| ||||| ||| | || ||| ||| ||| | ||||| |||||| Sbjct 50252 CAGCGCCTTATCTTTGCAGGCAAGCAGCTTGAAGATGGCCGTACCCTTTCCGACTACAAC 50193 Query 22399 ATTCAAAAAGAATCCACCATACAT 22422 ||||| || || |||||| | ||| Sbjct 50192 ATTCAGAAGGAGTCCACCTTGCAT 50169 >seq430 Length=15258 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || ||||| || || | ||||| ||||| || || | Sbjct 1211 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATTACTCTCGAAGTCGAGTCCTCG 1270 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || | || || || || || ||||| || ||||| || || || Sbjct 1271 GACACTATCGACAATGTTAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAG 1330 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| ||||| || || ||| | || || ||| ||| |||| ||||||||| Sbjct 1331 CAGCGTCTTATCTTTGCTGGAAAGCAGCTCGAAGACGGCCGAACCCTCTCGGATTACAAC 1390 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| |||||||| | ||| | ||| |||||||||| || ||| Sbjct 1391 ATCCAAAAGGAATCCACGTTGCATCTCGTTCTGCGATTGCGAGGTGGT 1438 Score = 123 bits (136), Expect = 2e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | |||||||| || |||| || || ||||| | || Sbjct 983 ATGCAGATCTTCGTAAAGACTCTGACCGGTAAGACCATCACCCTCGAGGTGGAGTCTTCC 1042 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || ||||| ||||||||||||||||| |||||||| Sbjct 1043 GACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGTATTCCTCCCGATCAG 1102 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || ||||| || ||| | |||||| || ||| | || || |||||| Sbjct 1103 CAGCGTCTCATTTTCGCCGGAAAGCAGCTTGAGGATGGACGAACCCTTTCGGACTACAAC 1162 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || || ||| Sbjct 1163 ATCCAGAAGGAGTCGACC 1180 >seq245 Length=26962 Score = 132 bits (146), Expect = 4e-26 Identities = 150/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || ||||||||||| | || ||||| || |||| || || || || | Sbjct 23889 AAGATGCAGATCTTTGTTAAAACCCTCACGGGTAAGACCATCACCCTCGAGGTCGAGTCT 23948 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | ||| || |||| || || || |||||||| || ||||| || ||| Sbjct 23949 TCGGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGAT 24008 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| || ||||||||||| ||| | || ||| |||||| |||| |||||| Sbjct 24009 CAGCAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAAGATGGTCGCACCCTCTCGGATTAC 24068 Query 22396 AACATTCAAAAAGAATCCACC 22416 ||||| || || || |||||| Sbjct 24069 AACATCCAGAAGGAGTCCACC 24089 >seq29 Length=80376 Score = 109 bits (120), Expect = 5e-19 Identities = 129/175 (74%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 22242 AACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACA 22301 ||| ||||| || |||| ||||| ||||| | |||| ||| | ||| | |||| Sbjct 50040 AACAGGTAAGACCATCACCCTTGAGGTGGAGTCTTCCGACACCATCGACAACGTCAAGGC 49981 Query 22302 AAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAA 22361 || || || |||||||||||||| || ||||| || || ||||| || || ||||| || Sbjct 49980 CAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAGCAGCGTCTCATCTTCGCCGGTAA 49921 Query 22362 ACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 ||| | ||||| ||||||| |||| || |||||||| || || || || ||| Sbjct 49920 GCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCTACC 49866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419680697572555