Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq97 131 3e-25 seq257 109 1e-18 seq549 98.7 2e-15 >seq97 Length=49960 Score = 131 bits (144), Expect = 3e-25 Identities = 408/623 (65%), Gaps = 23/623 (4%) Strand=Plus/Minus Query 293032 GTTTTAAGACCCTTCTTCCATGCGTAGAACAGCATAGATGTCATA-GACTTCAGTGTGGG 293090 || || |||||||||||||| ||||||| |||| || |||| ||| | ||||| Sbjct 19620 GTCTTGAGACCCTTCTTCCAACCGTAGAAGTGCATCGAAGTCAACTGACCGAAA-GTGGG 19562 Query 293091 AGTGGCCAGGAAAAGGTTCATGCTCTGCGTCTGATCGACAAAGGCACCACGATCAGCAGC 293150 || | || | | ||| | || | ||| | || ||||| || ||||| || Sbjct 19561 AGCCGACAAGTGGATGTTGAGCGATTGAGACTGGCAAATGAAAGCACCTCGGTCAGCGGC 19502 Query 293151 GAGGTCAATCACTGTCTTCATAGAGATCTCCCACGATGTCTTGTACACTGCCTTGACA-- 293208 | ||| || | | |||| ||||||||||| |||||||| | ||||| | Sbjct 19501 CATGTCGATGATAGCCTTCTGGGAGATCTCCCAAACAGTCTTGTAGAGCTTCTTGATACG 19442 Query 293209 -TCAGGATGAATGCCAATAACCTTCTGGATAGACCCTCCGTTGGCAATAATCTGGTTCTT 293267 || || || ||| ||| |||||||| || || |||| || || || ||||||| Sbjct 19441 GTCGGGG---ATACCAGGAACGTTCTGGATGGAACCACCGTGAGCGATGATACGGTTCTT 19385 Query 293268 CATTGTCTCGGACCA-AGTCCCACGAGCAATGAGCTCGCGGACAAGGTAAGAGTTGACAA 293326 |||||| ||| ||| | |||| | ||| ||| ||||||| | ||| |||||| | Sbjct 19384 CATTGTGTCGTTCCACAATCCCT-GCTCAACGAGTTCGCGGAGCAACCAAGGGTTGACGA 19326 Query 293327 CGGGGAACTCACCAGCGAGAGTGCGACGGCTGTAAATGTTCGAAGTGATGGGTTCGGCTG 293386 | |||| ||||||||||| ||||| ||| ||||| || ||| ||| ||| Sbjct 19325 CCTGGAATTCACCAGCGAGGACACGACGAGAGTAGATGTTGGAGGTGTAGGGCTCGAAAC 19266 Query 293387 CCTCAACAGACCCGCAAATCTGAGCAGTAGATGCGGTAGGCATAAGAGCAGTCGTCAGAG 293446 || | || | |||||| ||||||||||||||||| |||| | || | Sbjct 19265 ATTCGTTGAAACCCAAGATCTGACTTGTAGATGCGGTAGGCATGGGAGCGAGCAAGAGCG 19206 Query 293447 AGTTCCTCACACCCTTCTTGACACGCGAT-------TCGAGACCCGCCCAGTCCAGAGCA 293499 |||| | | ||| | |||| ||||| | ||| | ||||||||| | | Sbjct 19205 AGTTGCGGAGACCGTGCTTG----GCGATCTTGGCCTTGAGGCTAGCCCAGTCCCAAAGA 19150 Query 293500 GTCTG-AGGTGTAACACCCCAGAGATGATACTGCATGATACCCTTGCTGGCAGGAGACCC 293558 || | ||| || |||||||| | | ||||| | ||||| | |||||||| || Sbjct 19149 -TCGGAAGGAGTGACACCCCACATGTCGTACTGGAGTTCACCCTGGGAAGCAGGAGAGCC 19091 Query 293559 CTCAAAGGTGGGATGGGGGCCATGCTCATCAGAGAGCTCGCAAGATGCCTCAACAGCAGC 293618 | |||| | || ||| ||||| | || | |||||| ||| ||||| ||| || Sbjct 19090 GGCGTAGGTCTCGTAGGTGCCGTGCTCTTGAGCCAACTCGCACGATCGCTCAAGAGCGGC 19031 Query 293619 AAAGTAAATGTGCTCGAAGATCT 293641 | ||| ||| ||||||||||| Sbjct 19030 ATGGTAGATGGTCTCGAAGATCT 19008 >seq257 Length=26072 Score = 109 bits (120), Expect = 1e-18 Identities = 230/339 (68%), Gaps = 8/339 (2%) Strand=Plus/Minus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCC 218577 || |||||| |||||||||||||||| |||||| | || |||||| || || Sbjct 23235 GATTTCATCAACAAGGAGCTCATTCTCTTCTCGATGGCCGACAACATGCGTTCGATCCCG 23176 Query 218578 AGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGG 218637 || || ||||| ||||||||| || || ||| || |||| | | ||||| || Sbjct 23175 TCCGCCGTCGATGGTCTCAAGCCAGGTCAACGAAAGGTCATCTTCGGTACCTTCAACCGC 23116 Query 218638 AACCTGGTTCAAG---AAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCT 218694 || || | | | | || |||||||||||| | ||| | || |||| | || Sbjct 23115 AA---GGGTGACGGTGAGATCAAGGTCGCTCAGCTCGTCGGTCACGTCTCCGGTACCACT 23059 Query 218695 GGCTACCATCACGGTGAGCAGAGTCTGCAGGGTG-CCATTGTAGGCATGGCACAGGACTA 218753 | ||||| |||||||| ||| || | || |||| || || | || ||| ||| Sbjct 23058 GCTTACCACCACGGTGAACAGTCGCTT-ACCATGACCATCGTGGGTCTCGCGCAGAACTT 23000 Query 218754 TGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATT 218813 || || || |||||| | |||||||| || | ||||| || ||| ||||| | | Sbjct 22999 CGTCGGTAGCAACAACGTCAACTTGCTCGAGCCTAGGGGTCAATTCGGTACTCGTTTGCT 22940 Query 218814 GGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTAC 218852 ||||| || ||| ||| || |||||||||||||| || Sbjct 22939 CGGTGGTAAAGATGCTGCCTCGGCCAGGTATATCTTCAC 22901 >seq549 Length=9321 Score = 98.7 bits (108), Expect = 2e-15 Identities = 126/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 |||||||| || || |||| | ||||||||||| || |||| |||||||| || ||| Sbjct 6376 GGTGAGGACCTCTGCAACTGCCAGTTCTCGCTCGCCTACGGTGCCAAGATTCTCCTCAAC 6435 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 | || |||| |||||||||| |||| || |||||| ||||| || || | Sbjct 6436 ACCGCCACCCTCCGTCTCAAGCGTGGTCACCGATACGGTCTCTGCGGTCGTAACGGTTCC 6495 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCT 279518 |||||| || || ||||| ||||| | ||||||||| | || || || ||| Sbjct 6496 GGTAAGTCGACCCTCATGCGTGCCATCACCAACGGTCAGGTTGAGGGCTTCCCT 6549 Score = 96.9 bits (106), Expect = 7e-15 Identities = 132/181 (73%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238 ||||| || ||| |||||||||| ||||| |||| | | || || ||| || || Sbjct 7207 GGACCTAACGGTTCGGGTAAGTCGACCCTTGTCAAGCTTATCGTCGGTGACACCGAGCCC 7266 Query 280239 A-CTGAGGGGTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACG 280296 | || |||| ||| |||||||| ||||| || || | ||||||||| ||||||| Sbjct 7267 AACTC--GGGTGAGTTCTGGAAGCACCCCAATTTGGTCATTGGTTACGTCGCCCAGCACG 7324 Query 280297 CTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCT 280356 | |||||||||||||| | ||||| |||| ||| ||| | | ||||| | ||||| | Sbjct 7325 CCTTCCACCACATCGACCAGCACCTCGACAAGACCCCTCTCGACTACATGCTCTGGCGTT 7384 Query 280357 A 280357 | Sbjct 7385 A 7385 Score = 84.2 bits (92), Expect = 4e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 279704 TCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGA 279763 ||| || |||||||||||||||||| | ||||| | || |||||||| | ||||| Sbjct 6729 TCTCTCCGGTGGTTGGAAGATGAAGGTTGCCCTTGCCCGTGCCATTCTCTTCAAGGCCGA 6788 Query 279764 TGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGT 279823 | || || || || ||||| ||||||||| ||||| | |||||| ||| | Sbjct 6789 CATTCTTCTTCTCGACGAGCCTACCAACCACTTGGACGTCGTCAACGTCAAGTGGATTAC 6848 Query 279824 GTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTT 279883 ||| || || || |||| || || || |||| ||||| |||||||| || Sbjct 6849 CGACTATCTCTGCAACCTCAAGACTGCCACTGCCATCATCGTCTCGCACGACTCCAAGTT 6908 Query 279884 CCTAGATGCCGTGTGCTCTGCCATCATTCAC 279914 | | | | ||| ||| ||| |||| ||||| Sbjct 6909 CTTGAACGACGTCTGCACTGACATCCTTCAC 6939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027715024786727