Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq245 185 2e-41 seq23 185 2e-41 seq430 167 4e-36 seq549 140 6e-28 seq29 132 9e-26 seq544 131 3e-25 >seq245 Length=26962 Score = 185 bits (204), Expect = 2e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | ||| || |||||||| || |||||||| ||||| ||| Sbjct 24118 CCACCACGAAGGCGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAG 24059 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| ||||| || ||||| | || || || || ||| Sbjct 24058 AGGGTGCGACCATCTTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCAGGGGGA 23999 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| || ||||| |||||||| ||||||||||| | || || || Sbjct 23998 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCGACC 23939 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || ||||||||||| || || || |||||||| Sbjct 23938 TCGAGGGTGATGGTCTTACCCGTGAGGGTTTTAACAAAGATCTGCAT 23892 >seq23 Length=89368 Score = 185 bits (204), Expect = 2e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | ||| || ||||||||||| |||||||| || || ||| Sbjct 50374 CCACCACGGAGGCGGAGAACAAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCCGAG 50433 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| ||||||| || || || ||||| Sbjct 50434 AGAGTGCGGCCATCCTCGAGCTGCTTACCAGCGAAGATGAGTCGCTGCTGATCAGGTGGG 50493 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| || ||||| ||||||||| || |||||||| | || || || Sbjct 50494 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGGACTCGACC 50553 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || |||||||||||||| || |||||||| Sbjct 50554 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 50600 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 68265 GTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCG 68324 |||||||| || || ||||| || ||||| || || | |||||||| | |||||| || Sbjct 50176 GTGGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATCTTCAAGCTGCTTGCCT 50235 Query 68325 GCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTG 68384 || || || || | || ||||| || ||||| || ||||| || |||||||| ||||| Sbjct 50236 GCAAAGATAAGGCGCTGCTGGTCAGGGGGAATACCCTCCTTATCCTGAATCTTGGCCTTA 50295 Query 68385 ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTC 68444 ||| ||||||||||| | ||||| || || | ||||| || || || || | ||| Sbjct 50296 ACGTTGTCGATGGTGTCAGAGGATTCGACCTCAAGAGTGATAGTCTTGCCGGTCAAAGTC 50355 Query 68445 TTGACGAATATCTGCAT 68461 |||||||| || ||||| Sbjct 50356 TTGACGAAGATTTGCAT 50372 >seq430 Length=15258 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||| ||| || || ||||| || |||||||| || || || Sbjct 1209 CCACCACGGAGACGGAGAACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 1150 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| ||||| | || || ||||| ||| Sbjct 1149 AGGGTTCGTCCATCCTCAAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCGGGAGGA 1090 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| ||||||||| ||||||||||| | || || || Sbjct 1089 ATACCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 1030 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || || || ||||| ||||| |||||||| Sbjct 1029 TCGAGGGTGATGGTCTTACCGGTCAGAGTCTTTACGAAGATCTGCAT 983 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| ||||| || | ||| || || ||| || || || || ||||| || Sbjct 1665 CCGCCACGAAGACGCAAAACAAGGTGAAGAGTACTCTCCTTCTGAATATTGTAATCAGAC 1606 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || ||||| || || || || || | || || ||||| || ||| Sbjct 1605 AGAGTTCGTCCATCCTCCAACTGTTTACCAGCAAAAATCAATCGCTGCTGGTCAGGAGGA 1546 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| |||||||| |||||||| || || ||||| | ||||| ||| Sbjct 1545 ATACCTTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATCGTGTCCGAAGATTCGACT 1486 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| |||||||| ||||| ||||| |||||||| || |||||||| Sbjct 1485 TCCAAAGTGATGGTCTTTCCTGTGAGCGTCTTGACAAAGATCTGCAT 1439 Score = 141 bits (156), Expect = 2e-28 Identities = 150/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 68264 CGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCC 68323 |||||| || ||||||||||| ||||| ||||| || | || ||||| | |||||| || Sbjct 1408 CGTGGATTCCTTTTGGATGTTGTAATCCGAGAGGGTTCGGCCGTCTTCGAGCTGCTTTCC 1349 Query 68324 GGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTT 68383 || || || || | || ||||| || |||||||||||||| || || ||||| ||||| Sbjct 1348 AGCAAAGATAAGACGCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTT 1289 Query 68384 GACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGT 68443 || ||||| ||||| | || || ||||| | || ||||| || || || | ||| Sbjct 1288 AACATTGTCGATAGTGTCCGAGGACTCGACTTCGAGAGTAATGGTCTTGCCGGTCAAGGT 1229 Query 68444 CTTGACGAATATCTGCAT 68461 |||||| || |||||||| Sbjct 1228 CTTGACAAAGATCTGCAT 1211 >seq549 Length=9321 Score = 140 bits (154), Expect = 6e-28 Identities = 322/481 (67%), Gaps = 22/481 (5%) Strand=Plus/Minus Query 225524 ACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTCAGCATCAATG 225583 |||||| |||||||| |||||| ||||| ||||| ||||| || ||||| || | | | Sbjct 6836 ACGTTGACGACGTCCAAGTGGTTGGTAGGCTCGTCGAGAAGAAGAATGTCGGCCTTGAAG 6777 Query 225584 AGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGAGCCGATTGAA 225643 || ||||| || | || | | |||||| ||||| || ||||| || | |||| | Sbjct 6776 AGAATGGCACGGGCAAGGGCAACCTTCATCTTCCAACCACCGGAGAGACCGGCGATGGGC 6717 Query 225644 ACAGAGTGCTTA---GCTTCGTCAAAGCCGTACTCCAGGAGCGTCTGGA-----TAATGC 225695 |||| || | || ||||| |||||| || |||| |||| || | || | Sbjct 6716 ---GAGTTCTGACGGGCATCGTCGAAGCCGACTTCGTGGAGGGTCTTGACGGCCTCATCC 6660 Query 225696 GCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAGAGGTAATCATATACGGTCA 225755 | || | |||| | | ||| ||||| ||| | | ||| ||||||| Sbjct 6659 --TTGGT----CATCGAGAGACG-CGT----GTCGGCGCAGATGAAGTCAAGGACGGTCA 6611 Query 225756 TGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGTCCGGAGCTGAGAAGCAT 225815 | || | || |||||| |||||| || |||||| || |||| || | Sbjct 6610 TCTCACCCTCGGAACCGTCAAGGTCGTGCTCGACGTACCAGGTTCGGACCTCTTCGGGCG 6551 Query 225816 CGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGCCCGCGC 225875 ||||||||||| | ||| || || | || ||||| | ||||| ||| || | | Sbjct 6550 AAGGGAAGCCCTCAACCTGACCGTTGGTGATGGCACGCATGAGGGTCGACTTACCGGAAC 6491 Query 225876 CGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGTGGAGTTCA 225935 |||| ||||| ||| ||||| | | || ||||||| |||| | || ||| | Sbjct 6490 CGTTACGACCGCAGAGACCGTATCGGTGACCACGCTTGAGACGGAGGGTGGCGGTGTTGA 6431 Query 225936 GGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTCCTCACCCTCCT 225995 |||| |||||| |||| ||||| || ||||||| ||| | ||| |||||||||||||||| Sbjct 6430 GGAGAATCTTGGCACCGTAGGCGAGCGAGAACTGGCAGTTGCAGAGGTCCTCACCCTCCT 6371 Query 225996 C 225996 | Sbjct 6370 C 6370 >seq29 Length=80376 Score = 132 bits (146), Expect = 9e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || || ||||| || |||||||| || || ||| Sbjct 49837 CCACCACGGAGACGGAGGACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAG 49896 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| ||||| | || |||||||| || Sbjct 49897 AGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCGGGGGGG 49956 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| ||||||||| ||||||||||| | || || || Sbjct 49957 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 50016 Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437 || | ||||||||| || || || Sbjct 50017 TCAAGGGTGATGGTCTTACCTGT 50039 >seq544 Length=9533 Score = 131 bits (144), Expect = 3e-25 Identities = 361/544 (66%), Gaps = 17/544 (3%) Strand=Plus/Plus Query 10253 GTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAACCCAGACCGGGCATGAGCCC 10312 ||| || |||||||||||| ||||| ||||||||| || |||||||||||||| || Sbjct 3466 GTGAAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGACCGGGCATGAGACC 3525 Query 10313 CCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGAACAGAAGACCCTCCACGCA 10372 || || |||||||| || | | ||| || |||||||| | | |||||| ||| Sbjct 3526 ACGCTTCTTGAGCCAGAAGATAGAGGCGAAAGAACCGGAGAAGAAGATACCCTCTACGGC 3585 Query 10373 CACCCAGGCGACGAGGCGCTCTGCGAAGGAG--CGGTCGCGCGAAAAGTATTTCGA-GGC 10429 | | |||| ||||| |||||||| |||| | | ||| || || || ||| Sbjct 3586 CGCAAAGGCAACGAGACGCTCTGCAAAGGTGGCCTTTCGGTCGCTAATCCAGCGGAGGGC 3645 Query 10430 CCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTCGATAGCCTCGAAGAGCTTGTTACG 10489 ||| | ||||||| ||| | ||||| || |||| || || ||||| | || Sbjct 3646 CCAGTCAGCCTTCTGCTTGACGACCGGGATGGTTTCGACGGCGTCAAAGAGGAATTCGCG 3705 Query 10490 CTCGGTCTCGTCCTCA---ATAAGAGCATCAAGGAGCAGGGAGTATTGCTCGCTGTGGAC 10546 || |||| |||| || || || | ||| || || || |||| ||||| Sbjct 3706 CT---GCTCGGGCTCACGGATGTAAGTGTCGATGAGAAGCGAATAGGTCTCGGAGTGGAT 3762 Query 10547 GCTCTCATTGTACCCCTGGTAAGCGTAGAA-CATACGTGCCGAGGGGTCCGTGACTTCCT 10605 | |||| | |||| || ||||||| ||| || ||| || || ||| ||| Sbjct 3763 GTTCTCCATCATGATCTGGAAACCGTAGAAGCAT-CGAGCCTCGGCAGCC-TGA--ACCT 3818 Query 10606 CGGCA---AAGTTGTTGTTCAGGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGC 10662 ||| | || | | |||||||| | || || |||||| | || |||||| Sbjct 3819 CGGAACTGAAACGCTCGACGAGGTTCTCGTTGACGATACCATCGGAAGCAGCGAAGAAGG 3878 Query 10663 CGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCAGTTTTTCACGCCAGTCTACCA 10722 |||||| ||| ||||||||| ||||| | ||||| || || | |||||| | Sbjct 3879 CGAGGACGTGGGAGATGAAGTGACGCTCGTTGTCGTTGAGCTTGTTGTCCCAGTCATGAA 3938 Query 10723 CATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACA 10782 |||| | ||| | || |||||| |||||||||| | || ||||||||||||||| Sbjct 3939 GGTCCTTGGAGAGGTCGATCTCCTCGGCGGTCCAGAAGGAAGCCTCGGCCTTCTTGTACA 3998 Query 10783 TCTG 10786 | || Sbjct 3999 TTTG 4002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921515871970840