Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq97 284 2e-71 seq544 259 9e-64 seq297 84.2 4e-11 >seq97 Length=49960 Score = 284 bits (314), Expect = 2e-71 Identities = 765/1158 (66%), Gaps = 44/1158 (4%) Strand=Plus/Minus Query 244298 CCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAG 244357 ||||||||||| |||| || |||| | | || ||| |||||||| |||| Sbjct 19134 CCCCACATGTCGTACTGGAGTTCACCCTGGGAAGCAGGAGAGCCGGCGTAGGTCTCGTAG 19075 Query 244358 GGACCGTCGCGCTGG-GCCAGCTTACAGCTCTCG-TCGAGGGCGGCGTAGTAGATGGTCT 244415 | |||| || || | |||| || || | ||| || || ||||| | ||||||||||| Sbjct 19074 GTGCCGT-GCTCTTGAGCCAACTCGCA-CGATCGCTCAAGAGCGGCATGGTAGATGGTCT 19017 Query 244416 CGAAGATCATCTTGTTCATGTCG-CGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATC 244474 |||||||| ||||| ||| || |||| | | ||||| | ||||| ||| Sbjct 19016 CGAAGATCTGGACGTTCAA-TCGACGAGCCTCGGGCGATTCGAAGGCGTAACCCATGATC 18958 Query 244475 ATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAG 244534 |||||| | ||||| || ||||| || ||||| ||||| || | ||| ||| |||| || Sbjct 18957 ATGAAGGCATCGGCAAGACCCTGAACACCGATACCGATAGGGCGGTGACGCATGTTAGAA 18898 Query 244535 CGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTG 244594 || || || || ||||| ||||| |||||| | |||||| | ||| Sbjct 18897 CGACGAGCCTCCTCAACAGGGTAGTAGTTGATGTCGATGATCTTGTTCAAGTT------- 18845 Query 244595 ATCATGCGGACGACGTCGGCCAGCAGCTGAAAG---TCGTACTCGTAGGGATCCTCGGCG 244651 | ||| || | | ||| | | || || | ||| |||||| ||| || | Sbjct 18844 --CTTGCAGATAGCCTTGGCAACCTCGTGCAAACGCTTGTAGTCGTAGA---CCTTGGTG 18790 Query 244652 ATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCC 244711 | | | || | || | || |||| | ||| |||||||| || || ||||| Sbjct 18789 ACAGGG-TCG--ATGAAGGTGGGAAGAGCGATGGAGGCAAGGTTGCAAACAGCAACCTCA 18733 Query 244712 TCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGG 244771 || | |||||| || ||||| ||||| | ||| ||||||||| || || ||| Sbjct 18732 TCGGGAGCACTGTACTCGATGATCTCAGTGCACAAGTTGGAGCACTTGATAGTACCGAGG 18673 Query 244772 TGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTC 244831 | || || ||||||||| |||| |||||||||||||| |||||||| || ||| Sbjct 18672 TTCTTCTGGTTGGACTTGCGGTTGGCAGCGTCCTTGTAGAGGATGAAGGGGTTACCAGTC 18613 Query 244832 TCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCC 244891 ||| ||| | |||||| | || |||||| | | ||||||||| | |||| | Sbjct 18612 TCGGTCTGCGACTCGAGGATGGCGTACCAGAGCTTCTGAGCCTTGACGG---TGCG---C 18559 Query 244892 TTG------CCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACC 244945 ||| || || |||||||| || ||| || ||| ||||| || || Sbjct 18558 TTGGAACGACCTTCAGCCTCGTAACGCTCGTAGAGACGCTCAAACTCCTCACCGTAGCAG 18499 Query 244946 TCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACC 245005 || | || ||||||||| ||||||||||| ||| |||||| | || ||| Sbjct 18498 TCAGCGAGACCGGGGCACTCGTTGGGGCACATGAGCGACCATTCGCCGTTCTGCTCAACC 18439 Query 245006 CTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCG 245065 |||| ||||||||| ||||| | |||||| || | |||||| || | || | || Sbjct 18438 CTCTTCATGAAGAGATCGGGAACCCAGAGAGCGTAGAAGAGTTCACGGGCACGAACTTCT 18379 Query 245066 TCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCC 245125 ||| || |||||| | || || | || |||||||| || |||||| ||||| Sbjct 18378 TCCTTACCGTGGTTCTTGCGCAAGTCGAGGAACTCAAAGACATCCGAGTGCCAAGGCTCA 18319 Query 245126 ATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGC 245185 ||||||| || | ||| ||||| |||||||| || |||||||| | | | || || Sbjct 18318 ATGTAGATGGCAAAGGCACCGGGACGCTTGTTACCACCCTGGTCGA----CGTAACGGGC 18263 Query 245186 G----CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTT 245241 | |||||||| || || | || || || ||||| | ||||||||||| Sbjct 18262 GGTGTTGTTGAAGACACGAAGCATGGGAACGATACCGTTGCTGACACCGTTGGTGCCGGC 18203 Query 245242 GATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTT 245301 ||||| | ||| | || | | | | ||| || || | ||||||||| ||| Sbjct 18202 AATGTACGAGCCAGTACCTCGAATGCAGTGAATGTTCAAACCAATGCCGCCGGCGGTCTT 18143 Query 245302 GGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCAT 245361 |||||| | ||| ||| |||||| |||||| ||||| || || ||| |||||| Sbjct 18142 GGAGATCATGGCACAGGTCTTGAGGGTGTCGTAAATGCCATCGATCGAGTCATCCTTCAT 18083 Query 245362 GTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGG 245421 | | || || ||||| || ||||| || | ||| ||| | |||||| || || || Sbjct 18082 GGCAACAAGGAAACAGGACGAGAGCTGAGGATGGGGAGTGCCAGCGTTGAAGAGGGTTGG 18023 Query 245422 GCTGGCGTGGGTAAAGTA 245439 |||||| |||||||| Sbjct 18022 CGAGGCGTGAGTAAAGTA 18005 >seq544 Length=9533 Score = 259 bits (286), Expect = 9e-64 Identities = 457/655 (70%), Gaps = 12/655 (2%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || ||| |||||||||||||||||| ||||| Sbjct 4008 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATCGACCTC 3949 Query 42360 GCCAAGGACACGGCCGGCTGGGAGT-CACTGTCT--GAGAACGAAAAGTTTTTCCTCAAA 42416 |||||||| | |||||| || || || ||||| ||| || Sbjct 3948 TCCAAGGACCTTCATGACTGGGACAACAAGCTCAACGACAACGAGCGTCACTTCATCTCC 3889 Query 42417 AACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGG 42476 || | || ||||||||||| || || || || || ||||| |||||||| | | | Sbjct 3888 CACGTCCTCGCCTTCTTCGCTGCTTCCGATGGTATCGTCAACGAGAACCTCGTCGAGCGT 3829 Query 42477 TTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATA 42536 |||| ||||| ||| ||||| || ||||||||||| |||||||| || Sbjct 3828 TTCAGTTCCGAGGTTCAGGCTGCCGAGGCTCGATGCTTCTACGGTTTCCAGATCATGATG 3769 Query 42537 GAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTC 42596 |||||| | ||||| ||| || | || || |||| ||||||| || |||| Sbjct 3768 GAGAACATCCACTCCGAGACCTATTCGCTTCTCATCGACACTTACATCCGTGAGCCCGAG 3709 Query 42597 GAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGAC 42656 |||| | || || | ||| | || || || || | ||||| ||||||| ||| Sbjct 3708 CAGCGCGAATTCCTCTTTGACGCCGTCGAAACCATCCCGGTCGTCAAGCAGAAGGCTGAC 3649 Query 42657 TGGGCGCTCAACTGGATCGAGAGTCCCGACG-CAACGTTCGGCGAGAGGCTGGTAGCCTT 42715 ||||| ||| |||||| || | || | | | || || | ||| | || || ||||| Sbjct 3648 TGGGCCCTCCGCTGGATT-AGCGACCGAAAGGCCACCTTTGCAGAGCGTCTCGTTGCCTT 3590 Query 42716 TACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCA 42775 | | ||||| ||||| ||||||||||| || | |||||||| ||||||||||||||| | Sbjct 3589 TGCGGCCGTAGAGGGTATCTTCTTCTCCGGTTCTTTCGCCTCTATCTTCTGGCTCAAGAA 3530 Query 42776 GAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGC 42834 | ||| || |||||||| ||||||||||| ||||| |||||| | | |||||||| | Sbjct 3529 GCGTGGTCTC-ATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGTC 3471 Query 42835 TGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCA-CAAGCCCTCGAAG 42893 | || | ||||| ||||||||||| ||| |||||||||| | | | |||| | | Sbjct 3470 TTCACACCGACTTCGCCTGCCTCCTCTTC---AGCCACCTCAAGAAGCGCGCCCAC-CCG 3415 Query 42894 GAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCA 42948 || |||| |||||| | ||||| || || |||||||| |||||||||| Sbjct 3414 GATACCGTCCTCAAAATCATCGCCGAGGCGGTCGAAATCGAGAAAGAGTTCCTCA 3360 >seq297 Length=23183 Score = 84.2 bits (92), Expect = 4e-11 Identities = 139/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 242948 GTTCCCGGACAGGACCACTCCGATCGGACAGATGATCAACTCGTACCTGCTCAACAAGAG 243007 ||||||||| |||||||| | || || |||||||||||||| ||||| | | | || Sbjct 10386 GTTCCCGGAGAGGACCACCGCCATTGGTCAGATGATCAACTCTTACCTCGCCCAGACCAG 10327 Query 243008 CGATCTGGACGATCACGTCGTACACCTCCTGTTCTCGGCCAACCGATGGGAA---GCCGC 243064 ||| || ||||| || | | ||||| || ||||| ||||| || |||||| | ||| Sbjct 10326 CGACCTAGACGACCAGGCGATCCACCTTCTCTTCTCCGCCAATCGCTGGGAATGCGTCGC 10267 Query 243065 CTCCGACCTGAAGCGCAAGCT-GATGAAGGGTACCACCATCGTGCTCGACCGCTACGCGT 243123 || ||| | ||| | ||| || | ||| | | |||||| |||||| ||||| | Sbjct 10266 CT-CGA--TCAAGAAGACGCTCGAAGCAGGAGA-GAGCATCGTCTGCGACCGATACGCTT 10211 Query 243124 TCTCCGGCGTAGCCT 243138 |||| || | |||| Sbjct 10210 TCTCGGGTATCGCCT 10196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944230046192720