Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq430 143 6e-29 seq23 107 5e-18 seq3063 89.7 1e-12 seq257 84.2 5e-11 >seq430 Length=15258 Score = 143 bits (158), Expect = 6e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || | || || |||||||| | |||| ||| |||||||| || || || | | Sbjct 1437 CCACCTCGCAATCGCAGAACGAGATGCAACGTGGATTCCTTTTGGATGTTGTAATCCGAG 1378 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || |||||||| | || ||||| || ||||| |||||||| || | || Sbjct 1377 AGGGTTCGGCCGTCTTCGAGCTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCAGGGGGA 1318 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| ||||||||||| || || || || || || |||| || || || ||| Sbjct 1317 ATGCCTTCCTTATCCTGGATCTTGGCCTTAACATTGTCGATAGTGTCCGAGGACTCGACT 1258 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || ||||| ||||||| |||||||| || |||||||| Sbjct 1257 TCGAGAGTAATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 1211 Score = 116 bits (128), Expect = 9e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || || | || || || ||||| || ||||| | Sbjct 1209 CCACCACGGAGACGGAGAACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 1150 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || ||||| || || | || ||||| ||||| || |||||||| ||| || Sbjct 1149 AGGGTTCGTCCATCCTCAAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCGGGAGGA 1090 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || ||||| || || || || ||||| || || | ||| || || || Sbjct 1089 ATACCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 1030 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| |||||||||||||| ||||| |||||||| Sbjct 1029 TCGAGGGTGATGGTCTTACCGGTCAGAGTCTTTACGAAGATCTGCAT 983 >seq23 Length=89368 Score = 107 bits (118), Expect = 5e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||| | ||| || || || || || ||||||| || || || || ||| Sbjct 50161 AGGACAAGATGCAAGGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATCT 50220 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | || || ||||| ||||| || ||||| || | || || || || |||||| Sbjct 50221 TCAAGCTGCTTGCCTGCAAAGATAAGGCGCTGCTGGTCAGGGGGAATACCCTCCTTATCC 50280 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 || || || || || ||||| || || | || ||||| || || || ||||| ||| Sbjct 50281 TGAATCTTGGCCTTAACGTTGTCGATGGTGTCAGAGGATTCGACCTCAAGAGTGATAGTC 50340 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||||| |||||||||||| || ||||| Sbjct 50341 TTGCCGGTCAAAGTCTTGACGAAGATTTGCAT 50372 >seq3063 Length=327 Score = 89.7 bits (98), Expect = 1e-12 Identities = 109/142 (77%), Gaps = 5/142 (4%) Strand=Plus/Plus Query 207839 GAGCTTGGCTGCGGATCGCCCATA-TATC-TCTGTGAA-TTTTTACCGTACACGAGTTC- 207894 |||||||||||||||| |||||| || | ||| | || |||||||| ||| | | || Sbjct 68 GAGCTTGGCTGCGGATTGCCCATTGTAACATCTTTCAAGTTTTTACCATACCCAGGGTCA 127 Query 207895 TGCTCTCGTCCATC-ATAATGTTTCCACGATGATTTGGTATCACAAGCTTTAGGGGGTTC 207953 | |||| ||| | | ||||||||| | | ||||||| ||||||||||| || | Sbjct 128 TTAACTCGGCCACCGACTATGTTTCCATGTCGGCTTGGTATTGAAAGCTTTAGGGTGTCC 187 Query 207954 CCGCAATTTGACAGTGTCGCAA 207975 ||||||||||| |||||||||| Sbjct 188 CCGCAATTTGATAGTGTCGCAA 209 >seq257 Length=26072 Score = 84.2 bits (92), Expect = 5e-11 Identities = 286/431 (66%), Gaps = 16/431 (4%) Strand=Plus/Plus Query 325342 ATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTGATGTT 325401 ||| |||||||| |||| | | |||||| || ||| ||| | | |||||| ||| Sbjct 22927 ATCTTTACCACCGAGCAAACGAGTACCGAATTGACCCCTAGGCTCGAGCAAGTTGACGTT 22986 Query 325402 ATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCC 325461 ||||| ||||| | | ||| || || |||||||||| || || ||| || Sbjct 22987 GTTGCTACCGACGAAGTTCTGCGCGAGACCCACGATGGTCATGGTAAGCGACTGTTCACC 23046 Query 325462 ATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTCACGTCGGT 325521 ||||| || || | | | |||| |||| || ||| || ||||| | || Sbjct 23047 GTGGTGGTAAGCAGTGGTACCGGAGACGTGACCGACGAGCTGAGCGACCTTGATCTCAC- 23105 Query 325522 CGTCAAA-TTGCGCTTGAAAG--CTGAATATATCACTTTCCGTTGAGAAGGTTTGAAACC 325578 ||||| ||||| ||||| | | ||| || | ||||| ||||| || |||| ||| Sbjct 23106 CGTCACCCTTGCGGTTGAAGGTACCGAAGATGAC-CTTTC-GTTGACCTGGCTTGAGACC 23163 Query 325579 ATCAACGACCGACGGAATGCTTCGTTCCAGATCGTACCGCGAGAACAAAATAAGTTCCTT 325638 ||| ||| | ||||| || || ||| | |||||| | ||| || ||||| Sbjct 23164 ATCGACGGCGGACGGGATCGAACGCATGTTGTCGGCCATCGAGAAGAGAATGAGCTCCTT 23223 Query 325639 GTCGATGAAGTCGGGAACGGGAA-CCTCGGGCTTCTTGTGGTCAAGTTGATTTCCTGGTT 325697 || |||||| |||| | |||| ||| | | |||||||| || | |||| ||| Sbjct 23224 GTTGATGAAATCGGCATAAGGAATCCTATCGATG-TTGTGGTCGAGGTAGGTTCCAGGT- 23281 Query 325698 CGTATGCCGTC--ATCCACTCCTTGCGATCCTCGGC--TCGTGACTTGTTGAAAGAACGG 325753 || | | ||| | ||||||||| || || || || || | ||||||||||| | | Sbjct 23282 CGAAA-CTGTCGGAGCCACTCCTTTCGGTCATCCGCCTTCTT--CTTGTTGAAAGCAAGA 23338 Query 325754 TCAATGAGCTC 325764 ||||||||||| Sbjct 23339 TCAATGAGCTC 23349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179514637864466