Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq257 100 6e-16 seq3063 89.7 1e-12 >seq257 Length=26072 Score = 100 bits (110), Expect = 6e-16 Identities = 478/743 (64%), Gaps = 30/743 (4%) Strand=Plus/Plus Query 297158 TCTTCGATCTTACCTTTGAATCCTCGATACCACGGTTTCATTTCGACGAGATCTTCTCCA 297217 || ||||| | ||| |||| || || ||||| |||||||| || | || || ||| Sbjct 22622 TCCTCGATGTCACCGGTGAAGCCACGGTACCATGGTTTCATCGGAACAATGTCCTCACCA 22681 Query 297218 GCAATCAATCGCTTCACGTTGTCTACGATGTCTTTTGGATTGTAACTAGGGATATTAGTC 297277 || || ||| || |||| | || || || | || ||||| | |||| || Sbjct 22682 GCCATGCGTCGTCGCAAGTTGGCGACAATCTCGTGAGGGTTGTAGTTGGGGACGAAGGTG 22741 Query 297278 GACCAACCGGTACCGATTCCACTCGAACCATTCACCAGAATGCTCGGAATAACAGGCACA 297337 ||||||||||||||||| || | ||| || | || | || | ||||||| Sbjct 22742 GACCAACCGGTACCGATACCTTCAGCACCGTTGAGTAGCACCTGTGGCACCACAGGCATG 22801 Query 297338 TAATACTCTGGTTCGATCTTGTCACCGTCATCATACAGATATTTCAGAAGA---TTATCG 297394 || ||| || ||||| | | ||| ||||||| ||| |||| || | | | |||| Sbjct 22802 TACCACTGAGGCTCGATGCTCTGACCATCATCATCCAGGTATTCGAGCAAAGCGTCATCG 22861 Query 297395 TCCGTATCGACGAAAACCTGTCGAGTCTGA----GGGTTCAGTTTTGTGAAAATATATCG 297450 | | | || || | || || ||| ||| ||| ||||| ||||| | Sbjct 22862 TTCTGAGGGAAGAG-----GGCGCGTGTGATCTTGGG--CAGCGCGGTGAAGATATACCT 22914 Query 297451 TGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAA 297510 || || ||| |||||||| |||| | | |||||| || ||| ||| | Sbjct 22915 GGCCGAGGCAGCATCTTTACCACCGAGCAAACGAGTACCGAATTGACCCCTAGGCTCGAG 22974 Query 297511 CCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAG 297570 | |||||| ||| ||||| ||||| | | ||| || || |||||||||| || Sbjct 22975 CAAGTTGACGTTGTTGCTACCGACGAAGTTCTGCGCGAGACCCACGATGGTCATGGTAAG 23034 Query 297571 AGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAAC 297630 || ||| || ||||| || || | | | |||| |||| || ||| || || Sbjct 23035 CGACTGTTCACCGTGGTGGTAAGCAGTGGTACCGGAGACGTGACCGACGAGCTGAGCGAC 23094 Query 297631 CTTCACGTCGGTCGTCAAA-TTGCGCTTGAAAG--CTGAATATATCACTTTCCGTTGAGA 297687 ||| | || ||||| ||||| ||||| | | ||| || | ||||| ||||| Sbjct 23095 CTTGATCTCAC-CGTCACCCTTGCGGTTGAAGGTACCGAAGATGAC-CTTTC-GTTGACC 23151 Query 297688 AGGTTTGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGATCGTACCGCGAGAACAA 297747 || |||| |||||| ||| | ||||| || || ||| | |||||| | Sbjct 23152 TGGCTTGAGACCATCGACGGCGGACGGGATCGAACGCATGTTGTCGGCCATCGAGAAGAG 23211 Query 297748 AATAAGTTCCTTGTCGATGAAGTCGGGAACGGGAA-CCTCGGGCTTCTTGTGGTCAAGTT 297806 ||| || ||||||| |||||| |||| | |||| ||| | | |||||||| || | Sbjct 23212 AATGAGCTCCTTGTTGATGAAATCGGCATAAGGAATCCTATCGATG-TTGTGGTCGAGGT 23270 Query 297807 GATTTCCTGGTTCGTATGCCGTC--ATCCACTCCTTGCGATCCTCGGC--TCGTGACTTG 297862 |||| ||| || | | ||| | ||||||||| || || || || || | |||| Sbjct 23271 AGGTTCCAGGT-CGAAA-CTGTCGGAGCCACTCCTTTCGGTCATCCGCCTTCTT--CTTG 23326 Query 297863 TTGAAAGAACGGTCAATGAGCTC 297885 ||||||| | | ||||||||||| Sbjct 23327 TTGAAAGCAAGATCAATGAGCTC 23349 >seq3063 Length=327 Score = 89.7 bits (98), Expect = 1e-12 Identities = 109/142 (77%), Gaps = 5/142 (4%) Strand=Plus/Plus Query 183641 GAGCTTGGCTGCGGATCGCCCATA-TATC-TCTGTGAA-TTTTTACCGTACACGAGTTC- 183696 |||||||||||||||| |||||| || | ||| | || |||||||| ||| | | || Sbjct 68 GAGCTTGGCTGCGGATTGCCCATTGTAACATCTTTCAAGTTTTTACCATACCCAGGGTCA 127 Query 183697 TGCTCTCGTCCATC-ATAATGTTTCCACGATGATTTGGTATCACAAGCTTTAGGGGGTTC 183755 | |||| ||| | | ||||||||| | | ||||||| ||||||||||| || | Sbjct 128 TTAACTCGGCCACCGACTATGTTTCCATGTCGGCTTGGTATTGAAAGCTTTAGGGTGTCC 187 Query 183756 CCGCAATTTGACAGTGTCGCAA 183777 ||||||||||| |||||||||| Sbjct 188 CCGCAATTTGATAGTGTCGCAA 209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102749333879450