Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq97 215 6e-51 seq257 149 7e-31 seq544 131 2e-25 >seq97 Length=49960 Score = 215 bits (238), Expect = 6e-51 Identities = 921/1428 (64%), Gaps = 47/1428 (3%) Strand=Plus/Minus Query 113915 AACTCACCCGCGAGGGTGCGTCTCAGA-TAGATATTGGTCGTGTATGGCTCAAAGCACTC 113973 || ||||| |||||| || | ||| ||||| |||| ||||| ||||| || || || Sbjct 19320 AATTCACCAGCGAGGACACGACG-AGAGTAGATGTTGGAGGTGTAGGGCTCGAAACATTC 19262 Query 113974 ATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 114033 ||| ||||||||| || || || || || |||||||| || | | || ||| Sbjct 19261 GTTGAAACCCAAGATCTGACTTGTAGATGCGGTAGGCATGGGAGCGAGCAAGAGCGAGTT 19202 Query 114034 ACGGAGACC---CTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAG---TTG-- 114085 |||||||| ||| | | || |||||||| ||||||| | | | Sbjct 19201 GCGGAGACCGTGCTTGGCGATCTTGG---CCTTGAGGCTAGCCCAGTCCCAAAGATCGGA 19145 Query 114086 AGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCC 114145 || || | |||| |||| || ||||||| ||| ||||| || || || || Sbjct 19144 AGGAGTGACACCCC-----ACATGTCGTACTGGAGTTCACCCTGGGAAGCAGGAGAGCCG 19090 Query 114146 TCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGA-GCTCGCCTCGAGGGCTGC 114204 | | |||||||| | ||| | | | ||||| ||| | | |||| || || || || Sbjct 19089 GCGTAGGTCTCGTAGGTGCCGTGCTCTTGAGCCAACTCGCACGATCGC-TCAAGAGCGGC 19031 Query 114205 GTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGC 114264 || || || ||||| || || | | |||| | |||||| || || || || Sbjct 19030 ATGGTAGATGGTCTCGAAGATCTGGACGTTCAATCGACGAGCCTCGGGCGATTCGAAGGC 18971 Query 114265 GAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATG 114324 | | | || || |||| || ||||| || ||||||| || || ||||| || Sbjct 18970 GTAACCCATGATCATGAAGGCATCGGCAAGACCCTGAACACCGATACCGATAGGGCGGTG 18911 Query 114325 TCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATT 114384 | ||| ||||| ||||| ||| || || || | || | ||||| | | | || Sbjct 18910 ACGCATGTTAGAACGACGAGCCTCCTCAACAGGGTAGTAGTTGATGTCGATGATCTTGTT 18851 Query 114385 TAGATTTTTGGTGACAACCTTTGTGATTTCATGAA---GCTTTTCGTAATCAAAACTGCG 114441 | || ||| || | |||| | | || || | |||| | || | | | || | Sbjct 18850 CAAGTTCTTGCAGATAGCCTTGGCAACCTCGTGCAAACGCTTGTAGTCGT-AGACCTTGG 18792 Query 114442 AGTCTCT-TCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCT 114500 | | || ||| | | ||||| ||||| || || || || || |||| || Sbjct 18791 TGACAGGGTCGATGA---AGGTGGGAAGAGCGATGGAGGCAAGGTTGCAAACAGCAACCT 18735 Query 114501 CATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCA 114560 |||| | || ||||||| || || || || ||||| || || | ||| || || || | Sbjct 18734 CATCGGGAGCACTGTACTCGATGATCTCAGTGCACAAGTTGGAGCACTTGATAGTACCGA 18675 Query 114561 AGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCG 114620 |||||| || || ||||| ||| || |||||||| || ||| | || | || | Sbjct 18674 GGTTCTTCTGGTTGGACTTGCGGTTGGCAGCGTCCTTGTAGAGGATGAAGGGGTTACCAG 18615 Query 114621 TCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCGGCTGGCACAGTGGCGTTG 114679 |||| || || |||| ||| || || | ||||| | || | | || | || ||| ||| Sbjct 18614 TCTCGGTCTGCGACTCGAGGATGGCGTACCAGAGCTTCTGAGCCTTG-ACGGTGCGCTTG 18556 Query 114680 GCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCT 114739 | || || || ||||||| |||||| |||||||| ||||| | || Sbjct 18555 GAACGACCTTCAGCCTCGTAACGCTCGTAGAGACGCTCAAACTCCTCACCGTAGCAGTCA 18496 Query 114740 GAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGC 114799 | ||| || || || | ||||| | ||| ||||||| || || |||||| | | Sbjct 18495 GCGAGACCGGGGCACTCGTTGGGGCACATGAGCGACCATTCGCCGTTCTGCTCAACCCTC 18436 Query 114800 TTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCA 114859 ||||||||||| || || | ||||||||| ||||||| || || ||| ||||||| Sbjct 18435 TTCATGAAGAGATCGGGAACCCAGAGAGCGTAGAAGAGTTCACGGGCACGAACTTCTTCC 18376 Query 114860 TCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGG 114919 | || || || ||||| || | || || | || ||||| |||||| || || | | Sbjct 18375 TTACCGTGGTTCTTGCGCAAGTCGAGGAACTCAAAGACATCCGAGTGCCAAGGCTCAATG 18316 Query 114920 TACACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCTGTGGCA 114976 || | || | | || ||| |||| |||||| || || | || ||| Sbjct 18315 TAGATGGCAAAGGCACCGGGACGCTTGTTACCACCCTGGTCGACGTAACGGGCGGTGTTG 18256 Query 114977 TTAAATACGCGAAGCATTGGAATGATACCAT--CAGATTGGCCATTTGTCCCCCGAA--T 115032 || || || |||||||| |||| |||||| | | || || || || || || | Sbjct 18255 TTGAAGACACGAAGCATGGGAACGATACCGTTGCTGA--CACCGTTGGTGCCGGCAATGT 18198 Query 115033 ACGAGACTTATTGGCTCTGACATCA-TGGATGTGCATACCAATACCCCCTGCCCACTTTG 115091 ||||| | | | ||| || || || |||| || |||||| || || || ||| | Sbjct 18197 ACGAGCC--AGTACCTC-GAATGCAGTGAATGTTCAAACCAATGCCGCCGGCGGTCTTGG 18141 Query 115092 AGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTG 115151 |||| || || | |||| || |||| || || |||||||||||| |||| | | Sbjct 18140 AGATCATGGCACAGGTCTTGAGGGTGTCGTAAATGCCATCGATCGAGTCATCCTTCATGG 18081 Query 115152 CGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTG 115211 | | |||||| ||| ||| | || || || || |||||||||||||||||||| | Sbjct 18080 CAACAAGGAAACAGGACGAGAGCTGAGGATGGGGAGTGCCAGCGTTGAAGAGGGTTGGCG 18021 Query 115212 TCGCGTGGATGAACATAC-CTTGGGACATCTTATCGTAGGTCTCCA-AGACGGCGGGAAT 115269 |||| || || ||| ||| ||||| | ||| ||||| | || | | || Sbjct 18020 AGGCGT-GAGTAAAGTACTTTTGCGACATGAGGTTGTAAGTCTCGATAGCACTCTCG-AT 17963 Query 115270 GTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGG 115317 ||| | ||||||||||| | | ||| ||||| | ||||| ||||| Sbjct 17962 GTCCTGGCCGTGAATACCAACAGCGACACGCATGAGCATGTGCTGGGG 17915 >seq257 Length=26072 Score = 149 bits (164), Expect = 7e-31 Identities = 292/425 (69%), Gaps = 10/425 (2%) Strand=Plus/Plus Query 172576 CTTGAGGAGGGATGGCCAGAAGTAGTGGATCATATTCAGGATGAGACCCTTAATGTGTGA 172635 |||||| || ||||| |||||| || || | || | |||||||||||| || || || Sbjct 23593 CTTGAGCAGCGATGGGTAGAAGTGGTCGAGGAAGTTGATGATGAGACCCTTGATATGCGA 23652 Query 172636 ACCATCGTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCG-AAGCTCGGAAACAT 172694 |||||||| |||| ||| ||||| ||||| | | || || || ||||| | ||| | Sbjct 23653 ACCATCGTGATCCTGATCGGTCATGATCATGATACTGCCGTATCGCAAGCT-GCTAACGT 23711 Query 172695 CTTGATACTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTTGGT 172754 | |||| | || || ||||| ||||| | |||| ||||| | |||| |||| || Sbjct 23712 CGAGATATTGTTTGCCGTGTTGCAGACCGAGAATCTCCTTGATGGCTTTGATCTCTGCGT 23771 Query 172755 TTGATGTGAGTTGCGCCACTGAAGCATCGCGGACATTTTTACACTTCCCACGGAGAGGGA 172814 | ||| || | | ||| || || || || | ||| || ||||| |||| Sbjct 23772 TCTTCATGATCTGATCGTGAGTAGCCTCACGAACGTTGAGAAGCTTACCGCGGAGCGGGA 23831 Query 172815 ACACACCGTAGTGATCACGACCAACCACAGAAAGACCAGCAACTGCGAGGGTCTTCGCGG 172874 | |||||||||| |||||||| || || |||||| ||||| ||||| | ||| || | Sbjct 23832 AGACACCGTAGTTGTCACGACCCACTTCAACAAGACCGGCAACAGCGAGAGCCTTGGCTG 23891 Query 172875 AATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTC-CCCGCCTTGTTC 172933 | ||||| || || | ||||| ||||| | || || | | | | || || ||||| Sbjct 23892 AGTCACCTTCGGTGAGAATGAGTGTACAGTCCTTAGCTT-TCCTGCCACCTGCATTGTTG 23950 Query 172934 GCATCGTCCAACTTGGGAATACCAGTAATTTTGG---ACTTGCGGGCACCATCTGTCTTC 172990 ||||| || | |||||| || || || ||| |||| | ||| || |||||| Sbjct 23951 GCATCTTCGAGCTTGGGGATGTTGGTGATCCTGGTACGCTTGTG---ACCGTCGGTCTTC 24007 Query 172991 TTGAG 172995 ||||| Sbjct 24008 TTGAG 24012 >seq544 Length=9533 Score = 131 bits (144), Expect = 2e-25 Identities = 170/234 (73%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| ||||||||||| ||||||||||| || || |||||| || || ||||||||||| Sbjct 3466 GTGAAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGACCGGGCATGAGACC 3525 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||| | |||||| || | || ||||| ||||||||||| ||||| || Sbjct 3526 ACGCTTCTTGAGCCAGAAGATAGAGGCGAAAGAACCGGAGAAGAAGATACCCTCTACGGC 3585 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTC---AAACCACTTCAT 126234 ||| || |||| ||||||||| ||||||| | | |||| ||| || ||| | Sbjct 3586 CGCAAAGGCAACGAGACGCTCTGCAAAGGTG---GCCTTTCGGTCGCTAATCCAGCGGAG 3642 Query 126235 CGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAG 126288 ||||| | ||||| | || || ||||| ||| | || || |||||||| Sbjct 3643 GGCCCAGTCAGCCTTCTGCTTGACGACCGGGATGGTTTCGACGGCGTCAAAGAG 3696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597284553390760