Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq97 289 3e-73 >seq97 Length=49960 Score = 289 bits (320), Expect = 3e-73 Identities = 1162/1817 (64%), Gaps = 38/1817 (2%) Strand=Plus/Plus Query 93732 CTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTTTCCGAGCGACC 93791 |||||| ||||| ||| || ||| | ||| || | |||| |||| | ||||| || Sbjct 17857 CTTCAAGACTCTCGAGCGTTCCTACTTGCTCCGCATCAACGGCAAGGTTGCTGAGCGTCC 17916 Query 93792 GCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACATGCCGAATGTTTT 93851 || || |||| ||||| ||||| | || ||||||||||| ||||| || || | | Sbjct 17917 CCAGCACATGCTCATGCGTGTCGCTGTTGGTATTCACGGCCAGGACATCGAGAGTGCTAT 17976 Query 93852 GCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCCACCCCGACCCTGTTCAA 93911 | ||| || |||| | | ||| | ||| ||| | || ||||| ||||| Sbjct 17977 CGAGACTTACAACCTCATGTCGCAAAAGTACTTTACTCACGCCTCGCCAACCCTCTTCAA 18036 Query 93912 CGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACGAACAAGGCCGACTC 93971 ||| || || || || ||| | || || |||||||| | | | |||| ||||| Sbjct 18037 CGCTGGCACTCCCCATCCTCAGCTCTCGTCCTGTTTCCTTGTTGCCATGAAGGATGACTC 18096 Query 93972 CATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGG 94031 ||| || |||| ||||| ||||||| |||||| | ||||| || ||| || || Sbjct 18097 GATCGATGGCATTTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGACCGCCGGCGG 18156 Query 94032 AATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGG 94091 || || | | | ||| | | || | | || || ||||| ||| ||||| || Sbjct 18157 CATTGGTTTGAACATTCACTGCATTCGAGGTACTGGCTCGTACATTGCCGGCACCAACGG 18216 Query 94092 CACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGA 94151 | |||||| |||| || ||||| || |||||||||||| | || || ||||| || Sbjct 18217 TGTCAGCAACGGTATCGTTCCCATGCTTCGTGTCTTCAACAACACCGCCCGTTACGTCGA 18276 Query 94152 CCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGA 94211 |||||||||| | | | ||| | || || |||| | ||||| |||||| |||| Sbjct 18277 CCAGGGTGGTAACAAGCGTCCCGGTGCCTTTGCCATCTACATTGAGCCTTGGCACTCGGA 18336 Query 94212 CGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGA 94271 || | ||| ||||| |||| ||||||||||| || || | | ||| | || Sbjct 18337 TGTCTTTGAGTTCCTCGACTTGCGCAAGAACCACGGTAAGGAAGAAGTTCGTGCCCGTGA 18396 Query 94272 CCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGC 94331 |||||||||||||||||||| || || || || ||||| | || ||| | ||| || Sbjct 18397 ACTCTTCTACGCTCTCTGGGTTCCCGATCTCTTCATGAAGAGGGTTGAGCAGAACGGCGA 18456 Query 94332 CTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTTTGTGGATCGCGTTT 94391 ||| || | || ||||| || || ||||| || | ||| | || | || Sbjct 18457 ATGGTCGCTCATGTGCCCCAACGAGTGCCCCGGTCTCGCTGACTGCTACGGTGAGGAGTT 18516 Query 94392 TGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCA---GGAAGGTTATGGATGC 94448 ||| | || | |||||||| | | || ||| | | || | | || Sbjct 18517 TGAGCGTCTCTACGAGCGTTACGAGGCTGAAGGTCGTTCCAAGCGCACCGTCA---AGGC 18573 Query 94449 TAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTT 94508 | |||||| ||| | ||| | || ||| ||||| |||| |||| |||| | Sbjct 18574 TCAGAAGCTCTGGTACGCCATCCTCGAGTCGCAGACCGAGACTGGTAACCCCTTCATCCT 18633 Query 94509 GTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTC 94568 | ||||||| ||| |||| ||||||||||||| || ||||||| |||||| |||| Sbjct 18634 CTACAAGGACGCTGCCAACCGCAAGTCCAACCAGAAGAACCTCGGTACTATCAAGTGCTC 18693 Query 94569 GAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCT 94628 || ||||||| ||||| ||||||| | | |||| || ||| ||||||| || ||||| Sbjct 18694 CAACTTGTGCACTGAGATCATCGAGTACAGTGCTCCCGATGAGGTTGCTGTTTGCAACCT 18753 Query 94629 GGGCTCCATCAACCTGTCCACTTTCGTGCGA-GATGCCTAC-ACGTCTACTGCTTCGTTC 94686 | ||||||| || |||| ||| | ||| || | | | |||||| || | | Sbjct 18754 TGCCTCCATCGCTCTTCCCACCTTCAT-CGACCCTGTCACCAAGGTCTACGACTACAAGC 18812 Query 94687 GATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCTTGAACCTGAACAGGGTAATC 94746 | | || | ||| ||| || || || | |||| |||||| | | ||| Sbjct 18813 G-TTTGCACGAGGTTGCCAA------GG---CTATCTGCAAGAACTTGAACAAGATCATC 18862 Query 94747 GACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCTGAAGCATCGGCCCATC 94806 |||| |||| |||||| || |||||| || ||| || || || || ||| Sbjct 18863 GACATCAACTACTACCCTGTTGAGGAGGCTCGTCGTTCTAACATGCGTCACCGCCCTATC 18922 Query 94807 GGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGCGTCTGCCCTACGACTCT 94866 || ||||| || |||||| | || || || | |||| ||| || ||| ||| || Sbjct 18923 GGTATCGGTGTTCAGGGTCTTGCCGATGCCTTCATGATCATGGGTTACGCCTTCGAATCG 18982 Query 94867 GTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATTTATTACGGGGCCATGAAA 94926 ||| || | ||||| | | || ||||| | ||| || | | || | | Sbjct 18983 CCCGAGGCTCGTCGATTGAACGTCCAGATCTTCGAGACCATCTACCATGCCGCTCTTGAG 19042 Query 94927 CAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACGAATCGTTCCGCGGATCGCC- 94985 | ||| | | ||||| | | ||||| | |||| | | | ||| || || Sbjct 19043 CGATCGTGCGAGTTGGCTCAAGAGCACGGC---ACCTACGAGACCTACGCCGGCTCTCCT 19099 Query 94986 -CTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGTACG 95044 ||| ||||| | |||| |||| | |||||||| | || || | ||| | | Sbjct 19100 GCTT--CCCAGGGTGAACTCCAGTACGACATGTGGGGTGTCACTCCTTCCGATCTTTGGG 19157 Query 95045 ACTGGG--AAGCTCTACGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTG- 95101 |||||| | ||| | || || | ||| |||||| | ||| |||| |||| Sbjct 19158 ACTGGGCTAGCCTCAAGGCCAAGA--TCGCCAAGCACGGTCTCCGCAACTCGCT-CTTGC 19214 Query 95102 TGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAAC 95161 | || |||||||| || || || || |||||| | || |||||| | ||||| | Sbjct 19215 TCGCTCCCATGCCTACCGCATCTACAAGTCAGATCTTGGGTTTCAACGAATGTTTCGAGC 19274 Query 95162 CCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACA 95221 ||| |||||||||| | ||| | || || ||||| || ||||||| ||| ||||| Sbjct 19275 CCTACACCTCCAACATCTACTCTCGTCGTGTCCTCGCTGGTGAATTCCAGGTCGTCAACC 19334 Query 95222 AGCACCTCCTACGGGACCTGACGT--CTCTGGGTGTGTGGGGTGACAAGGTCAAGAACCA 95279 | || || || || ||| | ||| ||||| |||| | ||||||| Sbjct 19335 CTTGGTTGCTCCGCGAACT--CGTTGAGCAGGGATTGTGGAACGACACAATGAAGAACCG 19392 Query 95280 ACTGCTACGCGC-CAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAGGACATCAAGG 95338 | | ||| | | || ||| |||||||| | || || || || |||||| Sbjct 19393 TAT-CATCGCTCACGGTGGTTCCATCCAGAACGTTCCTGGTATCCCCGACCGTATCAAGA 19451 Query 95339 CGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTGATACTCGACCACGCGGCCGCCC 95398 |||||||||||| || ||||||||| | ||| | || ||||| || || | || Sbjct 19452 AGCTCTACAAGACTGTTTGGGAGATCTCCCAGAAGGCTATCATCGACATGGCCGCTGACC 19511 Query 95399 GCGGGCCCTTCATCTGCCAGAGNNNNNNNNNNNNNNNNNNNATGGCCGAGCCCAGTCGCG 95458 | || | ||||| |||||| || | | |||| | || Sbjct 19512 GAGGTGCTTTCATTTGCCAGTCTCAATCGCTCAACATCCACTTGTCGGCTCCCACTTTCG 19571 Query 95459 GAAAAATAACGTCCATGTTGTTCTACGGGTGGAGAAAGGGTCTCAAGACCGGTATGTATT 95518 | | | || || ||| |||||||| |||| ||||||||||||||||||| || | Sbjct 19572 GTCAGTTGACTTCGATGCACTTCTACGGTTGGAAGAAGGGTCTCAAGACCGGTACCTACT 19631 Query 95519 ATTTGCGAACCAGGCCA 95535 | | || |||| |||| Sbjct 19632 ACCTTCGTACCAAGCCA 19648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494666016182120