Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq97 136 4e-27 seq430 107 2e-18 seq29 86.0 6e-12 seq23 84.2 2e-11 >seq97 Length=49960 Score = 136 bits (150), Expect = 4e-27 Identities = 422/645 (65%), Gaps = 15/645 (2%) Strand=Plus/Minus Query 153821 CTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACA 153880 |||||| |||||||| || ||||||||||| || ||||||||||| ||||| ||||| || Sbjct 18541 CTCGTAACGCTCGTAGAGACGCTCAAACTCCTCACCGTAGCAGTCAGCGAGACCGGGGCA 18482 Query 153881 CTGATGCGGACACATCAGCGACCACATATCG-TCGGCGTTGACGCGTCGCATGAACAGAT 153939 || | || ||||| |||||||| || || || | || | |||||| |||| Sbjct 18481 CTCGTTGGGGCACATGAGCGACCATTCGCCGTTCTGC-TCAACCCTCTTCATGAAGAGAT 18423 Query 153940 CCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCGCCCATG---- 153995 | || |||||||| ||||| | ||| || || | | | | | || | || || Sbjct 18422 CGGGAACCCAGAGAGCGTAGAAGAGTTCACG-GGCACGAACTTCTTCCTTACCGTGGTTC 18364 Query 153996 TTGCGTTTCAGATTGAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCC 154055 ||||| || | ||| | | ||| || | |||||| || |||||||||| ||| Sbjct 18363 TTGCG---CAAGTCGAGGAACTCAAAGACATCCGAGTGCCAAGGCTCAATGTAGATGGCA 18307 Query 154056 AGGGCACCTTTACGC---TTTCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACG 154112 | |||||| |||| || || ||||| ||||||| || | | ||||||||||| Sbjct 18306 AAGGCACCGGGACGCTTGTTACCACCCTGGTCGACGTAACGGGCGGTGTTGTTGAAGACA 18247 Query 154113 CGCACCATGGGTTCCAGGCCGCTTGC-GGTGCCGTTGGTCGAATTGATCTTGCTGCCGCG 154171 || | |||||| | | ||| |||| | |||||||| || | ||| Sbjct 18246 CGAAGCATGGGAACGATACCG-TTGCTGACACCGTTGGTGCCGGCAATGTACGAGCCAGT 18188 Query 154172 GGCGCGCACTTGATGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCA 154231 | || | || | ||| | |||||||||||| || ||| || || || || Sbjct 18187 ACCTCGAATGCAGTGAATGTTCAAACCAATGCCGCCGGCGGTCTTGGAGATCATGGCACA 18128 Query 154232 GTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACA 154291 | || || ||| ||||| ||||| || || | | | | | |||||| Sbjct 18127 GGTCTTGAGGGTGTCGTAAATGCCATCGATCGAGTCATCCTTCATGGCAACAAGGAAACA 18068 Query 154292 CGAACACATTTGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAA 154351 || | | || ||| | | || || || |||||||| || ||||| ||||| Sbjct 18067 GGACGAGAGCTGAGGATGGGGAGTGCCAGCGTTGAAGAGGGTTGGCGAGGCGTGAGTAAA 18008 Query 154352 CAGTTTTTGGCTCATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAAT 154411 ||||| ||| | | ||| || ||||| || ||||| || | ||||||||| Sbjct 18007 GTACTTTTGCGACATGAGGTTGTAAGTCTCGATAGCACTCTCGATGTCCTGGCCGTGAAT 17948 Query 154412 GCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTCGGCGAC 154456 || | ||||| ||||||||||||||||| ||||| || || || Sbjct 17947 ACCAACAGCGACACGCATGAGCATGTGCTGGGGACGCTCAGCAAC 17903 >seq430 Length=15258 Score = 107 bits (118), Expect = 2e-18 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| | || | | | |||||||| || ||||||||||| Sbjct 1209 CCACCACGGAGACGGAGAACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 1150 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| || || || |||| | || |||||||| || || ||||| Sbjct 1149 AGGGTTCGTCCATCCTCAAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCGGGAGGA 1090 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| ||| | || | || | |||| | | |||||||| ||||||| Sbjct 1089 ATACCCTCCTTGTCC-TGAATCTTGGCCTTGACGTTGT-CGATGGTGTCGGAAGACTCCA 1032 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||||| || | || ||||| |||||||| ||||| || ||||||||| Sbjct 1031 CCTCGAGGGTGATGGTCTTACCGGTCAGAGTCTTTACGAAGATCTGCATG 982 >seq29 Length=80376 Score = 86.0 bits (94), Expect = 6e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || || ||||||||| || ||||||| Sbjct 49870 GACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCG 49929 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| || || ||||| || ||||| ||| || || | Sbjct 49930 AAGATGAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACG 49989 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGT 138590 | || | |||||||| ||||||||||| | || | || ||||| || Sbjct 49990 TTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTCTTACCTGT 50039 >seq23 Length=89368 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | || | ||| | | | |||||||| ||||||||||||||| Sbjct 50146 CCGCCACGAAGACGGAGGACAAGATGCAAGGTGGACTCCTTCTGAATGTTGTAGTCGGAA 50205 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || || || || || | | |||| || ||||| ||||| || || Sbjct 50206 AGGGTACGGCCATCTTCAAGCTGCTTGCCTGCAAAGATAAGGCGCTGCTGGTCAGGGGGA 50265 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || || || ||| | || | |||| ||| || | |||||| | || || | Sbjct 50266 ATACCCTCCTTATC-CTGAATCTTGGCCTTAACGTTG-TCGATGGTGTCAGAGGATTCGA 50323 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || || |||| ||| || || || || ||||| Sbjct 50324 CCTCAAGAGTGATAGTCTTGCCGGTCAAAGTCTTGACGAAGATTTGCAT 50372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496205038269840