Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq23 125 7e-24 seq430 118 1e-21 seq245 116 4e-21 >seq23 Length=89368 Score = 125 bits (138), Expect = 7e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| || || ||||| || | ||||| ||| || ||||| || ||| Sbjct 50404 GTGGACTCTTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCATCCTCGAGCTGCTTACCA 50463 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | |||||||||||| || || ||||| ||||||||| ||| || |||| Sbjct 50464 GCGAAGATGAGTCGCTGCTGATCAGGTGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTG 50523 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| || | |||||||| |||||| |||| ||| | || |||||||| || || Sbjct 50524 ACGTTG-TCAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGT 50582 Query 127096 TTTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 50583 CTTGACAAAGATCTGCAT 50600 >seq430 Length=15258 Score = 118 bits (130), Expect = 1e-21 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || | || || ||| || ||||| ||||| Sbjct 1179 GTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTTCGTCCATCCTCAAGCTGCTTTCCG 1120 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | || | ||||||||||||||||| || |||||||||||| || || |||| Sbjct 1119 GCGAAAATGAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCCTGAATCTTGGCCTTG 1060 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | ||||| ||| |||||| | | ||| || |||| ||| | || || ||||||||||| Sbjct 1059 ACGTTGT-CGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTACCGGTCAGAGT 1001 Query 127096 TTTTACAAAAATCTGCATG 127114 ||||| || ||||||||| Sbjct 1000 CTTTACGAAGATCTGCATG 982 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || ||||||| || | ||| | ||| || || ||||| || |||||||| Sbjct 1437 CCACCTCGCAATCGCAGAACGAGATGCAACGTGGATTCCTTTTGGATGTTGTAATCCGAG 1378 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| |||||||| |||| | |||||||| || || || Sbjct 1377 AGGGTTCGGCCGTCTTCGAGCTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCAGGGGGA 1318 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| ||||| ||| ||| || ||| | | |||| ||||||| ||||||| Sbjct 1317 ATGCCTTCCTTATCCTGGATCTTGGCCTTAACATTGTCGATAGTGTCCGAGGACTCGACT 1258 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | || |||||||||| || || ||||| |||||||| Sbjct 1257 TCGAGAGTAATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 1211 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 ||||| || | || | ||| ||| || |||||||||||||| || || || | Sbjct 1653 CGCAAAACAAGGTGAAGAGTACTCTCCTTCTGAATATTGTAATCAGACAGAGTTCGTCCA 1594 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || | |||||| ||||| | |||||||||||||| || ||||| || || |||||| Sbjct 1593 TCCTCCAACTGTTTACCAGCAAAAATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTG 1534 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| || || ||||| | || | ||||||| | |||||||| | || | Sbjct 1533 TCCTGAATCTTGGCCTTGACATTGTCAATCGTGTCCGAAGATTCGACTTCCAAAGTGATG 1474 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || || || || || ||||| |||||||| Sbjct 1473 GTCTTTCCTGTGAGCGTCTTGACAAAGATCTGCAT 1439 >seq245 Length=26962 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || |||||||| | |||||| ||| || ||||| || || Sbjct 24088 GTGGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGACCATCTTCGAGCTGCTTGCCG 24029 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | ||||||||||| || || ||||| ||||||||| ||| || |||| Sbjct 24028 GCAAAGATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 23969 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||||| | |||||| |||| ||| | || || || || || ||| Sbjct 23968 ACATTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTT 23909 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 23908 TTAACAAAGATCTGCAT 23892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475445838051280