Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq97 215 6e-51 seq257 161 1e-34 seq544 125 9e-24 >seq97 Length=49960 Score = 215 bits (238), Expect = 6e-51 Identities = 918/1427 (64%), Gaps = 45/1427 (3%) Strand=Plus/Minus Query 115876 AACTCACCCGCGAGGGTGCGTCTCAGA-TAGATGTTGGTCGTGTATGGCTCAAAGCACTC 115934 || ||||| |||||| || | ||| |||||||||| ||||| ||||| || || || Sbjct 19320 AATTCACCAGCGAGGACACGACG-AGAGTAGATGTTGGAGGTGTAGGGCTCGAAACATTC 19262 Query 115935 ATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994 ||| ||||||||| || ||| || || || |||||||| || | | || ||| Sbjct 19261 GTTGAAACCCAAGATCTGACTTGTAGATGCGGTAGGCATGGGAGCGAGCAAGAGCGAGTT 19202 Query 115995 GCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAG---TTG--AGC 116049 ||||||||| | || |||||||| ||||||| | | | || Sbjct 19201 GCGGAGACCGTGCTTGGCGATCTTGGCCTTGAGGCTAGCCCAGTCCCAAAGATCGGAAGG 19142 Query 116050 TTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCA 116109 || | |||| |||| || ||||||| ||| ||||| || || || || | Sbjct 19141 AGTGACACCCC-----ACATGTCGTACTGGAGTTCACCCTGGGAAGCAGGAGAGCCGGCG 19087 Query 116110 AATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGA-GCTCGCCTCGAGGGCTGCGTG 116168 | ||||| || | ||| | | | ||||| ||| | | |||| || || || || || Sbjct 19086 TAGGTCTCGTAGGTGCCGTGCTCTTGAGCCAACTCGCACGATCGC-TCAAGAGCGGCATG 19028 Query 116169 ATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAG 116228 || || ||||| || || | | |||| | |||||| || || || ||| Sbjct 19027 GTAGATGGTCTCGAAGATCTGGACGTTCAATCGACGAGCCTCGGGCGATTCGAAGGCGTA 18968 Query 116229 ACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCT 116288 || | || || |||| || ||||| || ||||||| || || ||||| || | Sbjct 18967 ACCCATGATCATGAAGGCATCGGCAAGACCCTGAACACCGATACCGATAGGGCGGTGACG 18908 Query 116289 CATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAG 116348 ||| ||||| ||||| ||| || || || | || | ||||| | | | || | Sbjct 18907 CATGTTAGAACGACGAGCCTCCTCAACAGGGTAGTAGTTGATGTCGATGATCTTGTTCAA 18848 Query 116349 ATTTTTGGTGACAACCTTTGTGATTTCATGAA---GCTTTTCGTAATCAAAACTGCGAGT 116405 || ||| || | |||| | | || || | |||| | || | | | || | | Sbjct 18847 GTTCTTGCAGATAGCCTTGGCAACCTCGTGCAAACGCTTGTAGTCGT-AGACCTTGGTGA 18789 Query 116406 CTCT-TCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCAT 116464 | || ||| | | ||||| ||||| || || || || || |||| ||||| Sbjct 18788 CAGGGTCGATGA---AGGTGGGAAGAGCGATGGAGGCAAGGTTGCAAACAGCAACCTCAT 18732 Query 116465 CCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGT 116524 | | || ||||||| || || || || ||||| || || | ||| || || || | || Sbjct 18731 CGGGAGCACTGTACTCGATGATCTCAGTGCACAAGTTGGAGCACTTGATAGTACCGAGGT 18672 Query 116525 TCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCT 116584 |||| || || ||||| ||| || ||||||||||| || | || | || |||| Sbjct 18671 TCTTCTGGTTGGACTTGCGGTTGGCAGCGTCCTTGTAGAGGATGAAGGGGTTACCAGTCT 18612 Query 116585 CCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCT 116643 | || || |||| ||| || || | ||| | | || | | || | || ||| |||| Sbjct 18611 CGGTCTGCGACTCGAGGATGGCGTACCAGAGCTTCTGAGCCTTG-ACGGTGCGCTTGGAA 18553 Query 116644 CGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGA 116702 || || || ||||||| |||||| ||||||||| ||| || ||| || | Sbjct 18552 CGACCTTCAGCCTCGTAACGCTCGTAGAGACGCTCAAACTCCTCA-CCGTAGCAGTCAGC 18494 Query 116703 GAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTT 116762 ||| || || || | || || | ||| ||||||| || || |||||||| ||| Sbjct 18493 GAGACCGGGGCACTCGTTGGGGCACATGAGCGACCATTCGCCGTTCTGCTCAACCCTCTT 18434 Query 116763 CATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATC 116822 ||||||||| || || | |||||| || ||||||| || || ||| ||||||| | Sbjct 18433 CATGAAGAGATCGGGAACCCAGAGAGCGTAGAAGAGTTCACGGGCACGAACTTCTTCCTT 18374 Query 116823 CCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTA 116882 || || || ||||| || | || || | || ||||| |||||| || || | ||| Sbjct 18373 ACCGTGGTTCTTGCGCAAGTCGAGGAACTCAAAGACATCCGAGTGCCAAGGCTCAATGTA 18314 Query 116883 CACCGCGATTGACCCCTTGCGACG------ACCAGCCTGGTTTACATACCTCGCCGTTGC 116936 | || | | || | |||| |||| |||||| || || | || || Sbjct 18313 GATGGCAAAGGCACC---GGGACGCTTGTTACCACCCTGGTCGACGTAACGGGCGGTGTT 18257 Query 116937 GTTAAATACGCGAAGCATTGGAATGATACCAT--CAGATTGGCCATTTGTCCCCCGAA-- 116992 ||| || || |||||||| |||| |||||| | | || || || || || || Sbjct 18256 GTTGAAGACACGAAGCATGGGAACGATACCGTTGCTGA--CACCGTTGGTGCCGGCAATG 18199 Query 116993 TACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTG 117052 |||||| | | ||| | ||| |||| || |||||| || || || ||| | Sbjct 18198 TACGAGCC--AGTACCTCGAATGCAGTGAATGTTCAAACCAATGCCGCCGGCGGTCTTGG 18141 Query 117053 AGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTG 117112 |||| || || | |||| || |||| || ||||||||||||||| |||| | | Sbjct 18140 AGATCATGGCACAGGTCTTGAGGGTGTCGTAAATGCCATCGATCGAGTCATCCTTCATGG 18081 Query 117113 CGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTG 117172 | | ||||| ||| ||| | || || || || |||||||||||||||||||| | Sbjct 18080 CAACAAGGAAACAGGACGAGAGCTGAGGATGGGGAGTGCCAGCGTTGAAGAGGGTTGGCG 18021 Query 117173 TCGCGTGGATGAACATAC-CTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATG 117231 |||| || || ||| ||| ||||| | ||| ||||| | || ||| Sbjct 18020 AGGCGT-GAGTAAAGTACTTTTGCGACATGAGGTTGTAAGTCTCGATAGCACTCTCGATG 17962 Query 117232 TCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGG 117278 || | ||||||||||| | | ||| ||||| | ||||| ||||| Sbjct 17961 TCCTGGCCGTGAATACCAACAGCGACACGCATGAGCATGTGCTGGGG 17915 >seq257 Length=26072 Score = 161 bits (178), Expect = 1e-34 Identities = 267/380 (70%), Gaps = 4/380 (1%) Strand=Plus/Plus Query 176596 CTTGAGGAGGGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTGTGA 176655 |||||| || ||||| |||||| || || | |||| |||||||||||| || || || Sbjct 23593 CTTGAGCAGCGATGGGTAGAAGTGGTCGAGGAAGTTGATGATGAGACCCTTGATATGCGA 23652 Query 176656 ACCATCGTTATCCGCATCCGTCATAATCATGAGCCGACCATAGCG-AAGCTCGGAAACAT 176714 |||||||| |||| ||| ||||| ||||||| | || || || ||||| | ||| | Sbjct 23653 ACCATCGTGATCCTGATCGGTCATGATCATGATACTGCCGTATCGCAAGCT-GCTAACGT 23711 Query 176715 CTTGATAATCCTTACCTTGTTGAAGACCCAAAATCTTCTTGAGATCATTGAACTCTTGGT 176774 | |||| | || || ||||| ||||| | ||||| ||||| | |||| |||| || Sbjct 23712 CGAGATATTGTTTGCCGTGTTGCAGACCGAGAATCTCCTTGATGGCTTTGATCTCTGCGT 23771 Query 176775 TTGATGTGAGTTGCGCCACTGAAGCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGA 176834 | ||| || | | ||| || || || || | ||| |||||||| |||| Sbjct 23772 TCTTCATGATCTGATCGTGAGTAGCCTCACGAACGTTGAGAAGCTTACCGCGGAGCGGGA 23831 Query 176835 ACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGG 176894 | |||||||||| |||||||| || || ||||| ||||| ||||| | ||| || | Sbjct 23832 AGACACCGTAGTTGTCACGACCCACTTCAACAAGACCGGCAACAGCGAGAGCCTTGGCTG 23891 Query 176895 AATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTC-CCCGCCTTGTTC 176953 | ||||| || || | ||||| ||||| | || || | | | | || || ||||| Sbjct 23892 AGTCACCTTCGGTGAGAATGAGTGTACAGTCCTTAGCTT-TCCTGCCACCTGCATTGTTG 23950 Query 176954 GCATCGTCCAACTTGGGAAT 176973 ||||| || | |||||| || Sbjct 23951 GCATCTTCGAGCTTGGGGAT 23970 >seq544 Length=9533 Score = 125 bits (138), Expect = 9e-24 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| ||||||||||| ||||||||||| || || |||||| ||||| ||||||||||| Sbjct 3466 GTGAAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGACCGGGCATGAGACC 3525 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | |||||| || | || || || ||||||||||| ||||| || Sbjct 3526 ACGCTTCTTGAGCCAGAAGATAGAGGCGAAAGAACCGGAGAAGAAGATACCCTCTACGGC 3585 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGG 127679 ||| || |||| |||||||| ||||||| Sbjct 3586 CGCAAAGGCAACGAGACGCTCTGCAAAGG 3614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613436286236520