Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq544 149 1e-30 >seq544 Length=9533 Score = 149 bits (164), Expect = 1e-30 Identities = 375/569 (66%), Gaps = 6/569 (1%) Strand=Plus/Plus Query 159914 AACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGAC 159973 || |||||||| || |||||| ||| || |||||||| || ||||||| ||||||||| Sbjct 3443 AAGAGGAGGCAGGCGAAGTCGGTGTGAAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAG 3502 Query 159974 ATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCG 160033 | | |||| || ||||||| |||||| |||||||| || || | || |||| |||| Sbjct 3503 AAGGTGAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAAGAACCG 3562 Query 160034 CTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTG 160093 || ||||| ||||| ||||||||||| || ||||| | ||| |||| | ||| || Sbjct 3563 GAGAAGAAGATACCCTCTACGGCCGCAAAGGCAACGAGACGCTCTGCAAAGGTGGCCTTT 3622 Query 160094 GTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCG 160153 ||| |||| | |||||| |||||||||| || | ||| ||| ||| Sbjct 3623 CGGTCGCTAATCCAGCGGAGGGCCCAGTCAGCCTTCTGCTTGACGACCGGGATGGTTTCG 3682 Query 160154 ACGGCGTTAAA---CAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGC 160210 ||||||| ||| ||| | |||||| | || ||| ||| | || || Sbjct 3683 ACGGCGTCAAAGAGGAATTCGCGCTGCTCGGGC---TCACGGATGTAAGTGTCGATGAGA 3739 Query 160211 TTCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTC 160270 ||| || | || | ||| | || || || ||||| || |||||| || Sbjct 3740 AGCGAATAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGA 3799 Query 160271 GCCTCCAGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCG 160330 ||||| | ||| ||||| |||| | | | || || | || || | || Sbjct 3800 GCCTCGGCAGCCTGAACCTCGGAACTGAAACGCTCGACGAGGTTCTCGTTGACGATACCA 3859 Query 160331 TCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGT 160390 |||| || || ||||| || | ||||| |||||||| || | ||||| | |||||| Sbjct 3860 TCGGAAGCAGCGAAGAAGGCGAGGACGTGGGAGATGAAGTGACGCTCGTTGTCGTTGAGC 3919 Query 160391 CTCTTTTCCCAGTGTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAATTGGCA 160450 | || ||||||| | ||| | || | || | ||| || ||| |||| || | Sbjct 3920 TTGTTGTCCCAGTCATGAAGGTCCTTGGAGAGGTCGATCTCCTCGGCGGTCCAGAAGGAA 3979 Query 160451 GCCTGAGCAGTTTTGTACATGGCCCAGAT 160479 |||| || | |||||||| |||||| Sbjct 3980 GCCTCGGCCTTCTTGTACATTTGCCAGAT 4008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795063289998320