Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq430 147 5e-30 seq245 141 2e-28 seq23 125 2e-23 seq29 118 2e-21 seq1300 114 3e-20 seq1552 84.2 5e-11 >seq430 Length=15258 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || |||||||| ||||||||||| |||| ||||||||| | | || | |||||| Sbjct 1194 AGAACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTTCGTCCATCC 1135 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||||||||||||||| |||||||||||||| || ||| ||| || || ||| Sbjct 1134 TCAAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCC 1075 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| ||| |||| |||||| | | || || || | ||||| ||| Sbjct 1074 TGAATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTC 1015 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || ||||| || || || || || Sbjct 1014 TTACCGGTCAGAGTCTTTACGAAGATCTG 986 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || |||||||| ||||| |||||| || | ||||| |||| || ||| Sbjct 1659 CGAAGACGCAAAACAAGGTGAAGAGTACTCTCCTTCTGAATATTGTAATCAGACAGAGTT 1600 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||| |||| ||| || || || || || | ||||||||||| ||| ||| ||| Sbjct 1599 CGTCCATCCTCCAACTGTTTACCAGCAAAAATCAATCGCTGCTGGTCAGGAGGAATACCT 1540 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||| || || | ||||| | | ||| || ||||| Sbjct 1539 TCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATCGTGTCCGAAGATTCGACTTCCAAA 1480 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| || || ||||| || || Sbjct 1479 GTGATGGTCTTTCCTGTGAGCGTCTTGACAAAGATCTG 1442 Score = 93.3 bits (102), Expect = 1e-13 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| | || ||| || || || | || || |||||||||| |||||| || | | || Sbjct 1432 TCGCAATCGCAGAACGAGATGCAACGTGGATTCCTTTTGGATGTTGTAATCCGAGAGGGT 1373 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | || ||||| ||||||||||| || ||||| |||||||||||||| || ||| || Sbjct 1372 TCGGCCGTCTTCGAGCTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCAGGGGGAATGCC 1313 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| ||||| ||||| ||| || |||| ||||| | | || || || | Sbjct 1312 TTCCTTATCCTGGATCTTGGCCTTAACATTGTCGATAGTGTCCGAGGACTCGACTTCGAG 1253 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || | || || ||||| || || Sbjct 1252 AGTAATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTG 1214 >seq245 Length=26962 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| ||||| || || |||||||| |||| |||||| || | | || Sbjct 24112 CGAAGGCGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAGAGGGTG 24053 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| |||||||| ||||| ||||||||||||||||| || || ||| ||| Sbjct 24052 CGACCATCTTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCAGGGGGAATGCCT 23993 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || |||| |||||| | | || || || | Sbjct 23992 TCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCGACCTCGAGG 23933 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| |||||||||||||| ||||| ||||| || || Sbjct 23932 GTGATGGTCTTACCCGTGAGGGTTTTAACAAAGATCTG 23895 >seq23 Length=89368 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||||||||| ||||| || |||| ||||||||| | | ||| | ||||| Sbjct 50389 AGAACAAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCATCC 50448 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || ||||||||||| |||||||| || || || ||||| ||| Sbjct 50449 TCGAGCTGCTTACCAGCGAAGATGAGTCGCTGCTGATCAGGTGGGATGCCTTCCTTGTCC 50508 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| || | |||||| | | || || || | ||||| ||| Sbjct 50509 TGGATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTC 50568 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || ||||| || || Sbjct 50569 TTGCCGGTGAGGGTCTTGACAAAGATCTG 50597 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | |||||||| || | || |||||||| || | ||||||||| | | || Sbjct 50152 CGAAGACGGAGGACAAGATGCAAGGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTA 50211 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| |||||||| || || ||||| || ||||||||||| || ||| || Sbjct 50212 CGGCCATCTTCAAGCTGCTTGCCTGCAAAGATAAGGCGCTGCTGGTCAGGGGGAATACCC 50271 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||| ||| |||| |||||| | | ||| || || | Sbjct 50272 TCCTTATCCTGAATCTTGGCCTTAACGTTGTCGATGGTGTCAGAGGATTCGACCTCAAGA 50331 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | ||| || || || ||||| Sbjct 50332 GTGATAGTCTTGCCGGTCAAAGTCTTGACGAAGATTTG 50369 >seq29 Length=80376 Score = 118 bits (130), Expect = 2e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| |||||||| || |||||||| |||| ||||||||| | | || | || || Sbjct 49852 AGGACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCC 49911 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| |||||||||||||||||||||||||| || || || || ||| Sbjct 49912 TCGAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCC 49971 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| |||||| | | || || || | ||||| ||| Sbjct 49972 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTC 50031 Query 199598 TTACCCGT 199605 ||||| || Sbjct 50032 TTACCTGT 50039 >seq1300 Length=916 Score = 114 bits (126), Expect = 3e-20 Identities = 131/170 (77%), Gaps = 16/170 (9%) Strand=Plus/Plus Query 43091 CCTTTTAGTCTCTGAACCTTTT-CTTCTTTCGAAGAA-CTTGGCTGCGGATTGTCCAATC 43148 || ||||||||||||||||| |||||| |||||| |||||||||||||||||||||| Sbjct 195 CCATTTAGTCTCTGAACCTTCCACTTCTTGCGAAGAGGCTTGGCTGCGGATTGTCCAATC 254 Query 43149 CTCAACATTTTTACCATACCC-ACGCCATTACGCT--TGGTGCA-----ACTCTTTCGA- 43199 | | |||||||||||||| | ||||||| || || |||| | ||| ||| Sbjct 255 TCTAGCGTTTTTACCATACCCGAGGCCATTAACCTGGTGCTGCACCCCTAATCTCACGAT 314 Query 43200 ---GAAGCGGTAGTTGAGGCTCTAAGGAGTTTCCCGCAATTTGAGGATGT 43246 | ||||||| | |||||||||||||||||||||||| |||||| Sbjct 315 GGGGCCGCGGTAGCTAGAGCTCTAAGGAGTTTCCCGCAATTT--GGATGT 362 >seq1552 Length=657 Score = 84.2 bits (92), Expect = 5e-11 Identities = 103/137 (75%), Gaps = 9/137 (7%) Strand=Plus/Plus Query 43123 AGAACTTGGCTGCGGATTGTCCAATCCTCAACATTTTTACCATACCC-ACGCCATTACGC 43181 || |||||||||||||| |||||| | ||| |||||||||| ||| | | |||| | | Sbjct 337 AGGACTTGGCTGCGGATGATCCAATACCAAACGTTTTTACCATCCCCGAGGTCATTGCCC 396 Query 43182 T--TGGTGCAAC---TCTTTCGAGAAGC---GGTAGTTGAGGCTCTAAGGAGTTTCCCGC 43233 | || |||| |||||||| ||| ||||||| | ||||||||| || ||||| Sbjct 397 TGGTGCTGCACTCTGTCTTTCGACGAGCCGCGGTAGTTTGGTCTCTAAGGACTTCCCCGC 456 Query 43234 AATTTGAGGATGTTGCC 43250 ||||||| | ||| ||| Sbjct 457 AATTTGACGGTGTCGCC 473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178781924684549