Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq544 309 3e-79 seq430 123 2e-23 seq245 116 4e-21 seq29 107 2e-18 seq23 105 7e-18 >seq544 Length=9533 Score = 309 bits (342), Expect = 3e-79 Identities = 404/552 (73%), Gaps = 9/552 (2%) Strand=Plus/Plus Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 ||| || |||||| || | |||||||| | ||| ||||| |||||| ||| || | Sbjct 3451 GCAGGCGAAGTCGGTGTGAAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAG 3510 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013 ||||||||||| || || || |||||||| || || | ||||||| || || ||||| Sbjct 3511 ACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAAGAACCGGAGAAGAA 3570 Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGC 133073 || ||||| |||||||| || || || || ||||| | || ||||| | || | | || Sbjct 3571 GATACCCTCTACGGCCGCAAAGGCAACGAGACGCTCTGCAAAGGTGGCCT-TTCGGTCGC 3629 Query 133074 -GATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGT 133132 |||||||| || ||||| || ||||| | |||||| ||| || ||||||| |||| Sbjct 3630 TAATCCAGCGGAGGGCCCAGTCAGCCTTCTGCTTGACGACCGGGATGGTTTCGACGGCG- 3688 Query 133133 TCAACAAACGGAGTTTCTCT--TCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATA 133190 |||| | | | | | | || || | ||| | ||| ||||||||||| |||||| Sbjct 3689 TCAA-AGAGGAATTCGCGCTGCTCGGGCTCACGGATGTAAGTGTCGATGAGAAGCGAATA 3747 Query 133191 CATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGAC 133250 | || ||||| | ||||||||| ||| || || ||||| ||||| || |||||| | Sbjct 3748 GGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCGGC 3807 Query 133251 CACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGC 133310 |||| || || | |||||||||||| || || ||||||||||| || ||| || Sbjct 3808 AGCCTGAACCTCGGAACTGAAACGCTCGACGAGGTTCTCGTTGACGATACCATCGGAAGC 3867 Query 133311 GGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTT---CAAGCGCTC 133367 ||||| ||||| || ||||| |||||| || |||||||||||||| | | || Sbjct 3868 AGCGAAGAAGGCGAGGACGTGGGAGATGAAGTGACGCTCGTTGTCGTTGAGCTTGTTGTC 3927 Query 133368 CCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGC 133427 |||||| | ||||||||| ||||| | ||||||| ||||||| || || |||||||| Sbjct 3928 CCAGTCATGAAGGTCCTTGGAGAGGTCGATCTCCTCGGCGGTCCAGAAGGAAGCCTCGGC 3987 Query 133428 TTTTTTGTACAT 133439 || |||||||| Sbjct 3988 CTTCTTGTACAT 3999 >seq430 Length=15258 Score = 123 bits (136), Expect = 2e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || |||||||| || || || || || ||||||||| |||| || ||| | || Sbjct 983 ATGCAGATCTTCGTAAAGACTCTGACCGGTAAGACCATCACCCTCGAGGTGGAGTCTTCC 1042 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || || | ||||| ||||| ||||| |||| || Sbjct 1043 GACACCATCGACAACG-TCAAGGCCAAGATTCAGGACAAGGAGGGTATTCCTCCCGATCA 1101 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||||| ||| || || ||||| || || | || ||||| |||||||| Sbjct 1102 GCAGCGTCTCATTTTCGCCGGAAAGCAGCTTGAGGATGGACGAACCCTTTCGGACTACAA 1161 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| |||| || || |||| || ||| Sbjct 1162 CATCCAGAAGGAGTCGACCCTCCACCTGGTTCTCCGT 1198 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || ||||| ||||| || |||| |||||| || | Sbjct 1211 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATTACTCTCGAAGTCGAGTCCTCG 1270 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | |||| | || |||| || || || || |||||| | ||||| Sbjct 1271 GACACTATCGACAATGTTAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAG 1330 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || || || ||||| || |||| || |||||| || |||||| Sbjct 1331 CAGCGTCTTATCTTTGCTGGAAAGCAGCTCGAAGACGGCCGAACCCTCTCGGATTACAAC 1390 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||| | ||| ||||| | || ||||| ||| |||| || Sbjct 1391 ATCCAAAAGGAATCCACGTTGCATCTCGTTCTGCGATTGCGAGGTGG 1437 >seq245 Length=26962 Score = 116 bits (128), Expect = 4e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || ||||| |||||||| || ||||||||| |||| |||||| | Sbjct 23889 AAGATGCAGATCTTTGTTAAAACCCTCACGGGTAAGACCATCACCCTCGAGGTCGAGTCT 23948 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || |||| ||||| || || |||||| | || Sbjct 23949 TCGGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGAT 24008 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| ||||| | || ||||| ||||| || || | ||||||||| || ||| Sbjct 24009 CAGCAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAAGATGGTCGCACCCTCTCGGATTAC 24068 Query 38421 AACATCCAAAAGGA 38434 |||||||| ||||| Sbjct 24069 AACATCCAGAAGGA 24082 >seq29 Length=80376 Score = 107 bits (118), Expect = 2e-18 Identities = 126/168 (75%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326 || || || ||||||||| | || || ||| | |||||| | | | |||| | || | Sbjct 50039 ACAGGTAAGACCATCACCCTTGAGGTGGAGTCTTCCGACACCATCGACAACG-TCAAGGC 49981 Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386 || |||| ||||| ||||| || ||| ||||||| ||||| ||||| | ||| || || Sbjct 49980 CAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAGCAGCGTCTCATCTTCGCCGGTAA 49921 Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434 ||||| || |||| ||||||||| |||||||||||||| ||||| Sbjct 49920 GCAGCTCGAGGACGGCCGCACCCTCTCGGACTACAACATCCAGAAGGA 49873 >seq23 Length=89368 Score = 105 bits (116), Expect = 7e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| ||||| ||||||||| |||| |||||| || | Sbjct 50600 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCG 50541 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || || || || | || || Sbjct 50540 GACACCATTGACAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCACCTGATCA 50482 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| || || ||||| || || | ||||| ||| |||||||| Sbjct 50481 GCAGCGACTCATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGCACTCTCTCGGACTACAA 50422 Query 38423 CATCCAAAAGGA 38434 |||||| || || Sbjct 50421 CATCCAGAAAGA 50410 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || ||||| || ||||| | || ||||| || | Sbjct 50372 ATGCAAATCTTCGTCAAGACTTTGACCGGCAAGACTATCACTCTTGAGGTCGAATCCTCT 50313 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| |||| | || || | || || ||||| |||||| | ||||| Sbjct 50312 GACACCATCGACAACG-TTAAGGCCAAGATTCAGGATAAGGAGGGTATTCCCCCTGACCA 50254 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || ||||| ||||| || || | || ||||| ||||||||| Sbjct 50253 GCAGCGCCTTATCTTTGCAGGCAAGCAGCTTGAAGATGGCCGTACCCTTTCCGACTACAA 50194 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| || ||||| | || ||||| | || || ||| | | ||||| Sbjct 50193 CATTCAGAAGGAGTCCACCTTGCATCTTGTCCTCCGTCTTCGTGGCGG 50146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500114986276480