Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq15 389 5e-103 seq280 138 1e-27 seq81 127 3e-24 >seq15 Length=102925 Score = 389 bits (430), Expect = 5e-103 Identities = 770/1137 (68%), Gaps = 6/1137 (1%) Strand=Plus/Minus Query 7022 ATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTC 7081 |||||||| || || | || ||||| ||||| |||||||||||||| |||| || || Sbjct 88693 ATGGCGGCCTGAACGGCGGCACCGTAGGCGACGGCCTCATCGGGGTTGATCGACTTGTTG 88634 Query 7082 AGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGAT 7141 || || ||||| || | || | | | | || | || ||||| || || || Sbjct 88633 AGCTCACGGCCGTTGAAGAAGTCGGTGAGGAGCTTCTGGACCTTGGGGATACGGGTGGAA 88574 Query 7142 CCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTT 7201 |||||||| | ||||| || | || || |||||||| ||||| || || Sbjct 88573 CCACCGACAAGGACGATCTCGTGGACGGAACCCTTGTCGATCTTGGAGTCACGGAGGACC 88514 Query 7202 TTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCA 7261 || ||||| || || || | ||| | ||| || || ||||| ||||| ||| Sbjct 88513 TTCTCGACGGGCTCGATGGTGTGGGAGAAGAGGTCACCGCAGAGCTCCTCGAAACGGGCA 88454 Query 7262 CGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTT 7321 ||||| ||||| || ||||| || | || ||| | | ||| || || || ||||| || Sbjct 88453 CGGGTGATGGAGGTGTAGAAGTCGATACCCTCGAAGAGCGAGTCGATCTCGATGGTGGTC 88394 Query 7322 TGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGG 7381 || || | |||||| | || ||||| || |||||||| || || || | |||||| || Sbjct 88393 TGGGCAGCCGAAGAGAGAGTGCGCTTAGCACGCTCACAGGCGGTGCGGAGACGACGGAGA 88334 Query 7382 GCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGT 7441 ||||| | ||| || | || ||||| | || || || ||||| | ||||| Sbjct 88333 GCACGAGCGTTGGTGGTCAAGTCCTTCTTGTTCTTGCGCTTGAACTCCTGGACAAAGTGG 88274 Query 7442 CGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTG 7501 | ||| | ||||| || ||||| || | ||| || || || ||||| || ||| Sbjct 88273 TTGACGAGGCGGTTGTCGAAGTCCTCACCGCCAAGGTGGGTGTCACCAGCGGTGGCCTTG 88214 Query 7502 ACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGG 7561 || || |||||||| | || || | | | ||||||||| || ||||| || || || Sbjct 88213 ACCTCGAAGATACCCTCCTCGATTGTAAGGAGCGAAACATCGAAGGTACCTCCTCCGAGA 88154 Query 7562 TCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCC 7621 || || ||||| |||||| | ||| | || ||||| ||||||||||| ||||| || Sbjct 88153 TCGAAGATGAGGACGTTCTTTTCGCCCTCGGCCTTCTTGTCGAGACCGTAAGCGATGGCG 88094 Query 7622 GCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCT 7681 || || || || || || || ||||| | | ||| || || | ||| | | ||||| Sbjct 88093 GCAGCAGTGGGCTCGTTGATGATACGCATAACGTTGAGACCCGAAATGATACCGGCATCC 88034 Query 7682 TTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTG 7741 || || || || || || |||||||| ||||| || ||||| || ||||| || ||| || Sbjct 88033 TTGGTAGCCTGACGCTGAGAATCGTTGAAGTAAGCGGGGACGGTGACGACGGCATCCTTG 87974 Query 7742 ACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAA 7801 || | |||||| || | || ||| | || ||| ||| |||||||| || || Sbjct 87973 ACGGTGCCACCGAGGTAGGCCTCGGCGGTCTCACGCATCTTGAGGAGAACCATGGAAGAG 87914 Query 7802 ATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTA 7861 |||||||| | | || ||| | ||||| || | || | ||| |||| | Sbjct 87913 ATCTCTTCGGGGGTGAAGGTCTTCTTCTCACCCTTGTACTCGATGCGGATC-TGGGGCTT 87855 Query 7862 TCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGG 7921 |||| | | || |||| | | ||| | ||||| ||| || |||| || Sbjct 87854 GCCGC--CGGTGTTGACGACCTCGAAAGGCCAGTGCTTCATGTCGGACTGAACCTCGGGG 87797 Query 7922 TCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATG 7981 || ||||| | || ||||||||||| ||||| || || ||||| | || |||||| Sbjct 87796 TCGTCGAACTTGCGGCCAATAAGACGCTTAGCATCGAAGACAGTGTTATGAGGATTCATG 87737 Query 7982 GCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACG 8041 || |||||||| || || || ||||| ||||| || || || || ||||| Sbjct 87736 GCGACCTGGTTCTTGGCAGCATCTCCGATGAGACGCTC---CGAGTCAGTGAAGGCGACA 87680 Query 8042 TACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGC 8101 || || ||||| || || || || || ||||| ||||| | || || ||||| |||||| Sbjct 87679 TATGAGGGGGTGGTGCGGTTACCCTGATCGTTGGCAATGACCTCGACACGGTCATTTTGC 87620 Query 8102 CAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGCTTGAGTCATT 8158 |||||| |||| || || || || || || | ||| |||||||| || | |||||| Sbjct 87619 CAGACGGCGACACAGGAGTAGGTAGTACCAAGATCGATACCGATGGCCTTGGTCATT 87563 >seq280 Length=24731 Score = 138 bits (152), Expect = 1e-27 Identities = 454/701 (65%), Gaps = 36/701 (5%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || |||||||| | ||| || || || ||||| || || || |||| ||| Sbjct 12323 TCAAAGTCCTCACCACCAAGGTGAGTGTCACCAGCGGTAGCCAGCACCTCGAAGACACCA 12382 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || || | | ||||||||| || ||||| ||||| || || | || | | Sbjct 12383 GAGTCGATCGAAAGGAGCGAAACATCGAAGGTACCTCCACCAAGATCGTA---GACAATG 12439 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || | ||| | || ||||| || |||||||| || || || || || || || || Sbjct 12440 ATCTGAGACTCGCCGTTCTTCTTGTCAAGACCGTAAGCAATGGCGGCAGCAGTGGGCTCG 12499 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || | ||||| ||| ||| |||||||| || || | || || || || || || || Sbjct 12500 TTGACGATACGGAGAACGTTGAGGCCAGCGATGGTACCAGCGTCCTTGGTGGCCTGACGC 12559 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || | ||||| ||||| || ||||| || || || || | ||||| || | ||| || Sbjct 12560 TGAGCGTCGTTGAAGTAAGCGGGGACGGTGACAACGGCATGGGTGACCTTGTGACCAAGG 12619 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || | || ||| | || ||||| || |||||||| | || | ||| || | | Sbjct 12620 TAGGCCTCGGCGGTCTCCTTCATCTTCTGGAGAACCATAGCGGAGACCTCCTCGGGGGTG 12679 Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTT---ATCCGCAGCACCG 7873 || ||| | || ||||||| || | ||| ||| || || | || || Sbjct 12680 AAGACCTTCTTCTCGCCGTTAACGGTGACCTGAATGGCGGGCTTGCCATTCTTCTCAACG 12739 Query 7874 GGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTG--GTCCGAAA--- 7928 | ||| | | | | | | |||| ||| ||| ||| || Sbjct 12740 AG------CTTGAAGGG---AAGGTGCTTGGCGTC-----CCTTTTGAGGTCGGACTCAC 12785 Query 7929 ---ACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTG 7985 |||| | || || |||||||| || ||||| | ||||||| ||||||| ||| | Sbjct 12786 CCCACTTGCGACCAATGAGACGCTTGGCGTCAAAGATGGTGTTTTCGGGGTTCTGGGCGG 12845 Query 7986 TTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACG 8045 |||||||| || ||||| |||| ||||| ||| ||||| |||||||||| Sbjct 12846 CCTGGTTCTTGGCAGCGTCTCCGACGAGACGCTCAGGG------GTAAAGGCGACGTACG 12899 Query 8046 ATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGA 8105 | ||||| | || || ||||||||||| | || ||||| || ||| || || || || Sbjct 12900 AGGGGGTAATACGGTTTCCTTGGTCGTTGGTGATGATTTCGACACGGCCG-TTGACCTGA 12958 Query 8106 -CGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGAT 8145 | || || ||||| || || ||||| | ||| ||||| || Sbjct 12959 GCACCAACACACGAGTAGGTAGTTCCAAGATCGATACCAAT 12999 >seq81 Length=54945 Score = 127 bits (140), Expect = 3e-24 Identities = 274/409 (67%), Gaps = 8/409 (2%) Strand=Plus/Plus Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306 ||||| ||||| |||||||| ||| | | ||| ||||| || | | | | || || Sbjct 39490 TCCTCGAAACGGGCACGGGTGATGTTGGCCTGGAAGTCAACACCCTGGAAGAGAGAGTCG 39549 Query 7307 ATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTT 7366 | || | ||| || || | ||| || | || ||||| || |||||||| || | Sbjct 39550 ACCTCGACGGTGGTCTGGGTGACCGACGAGAGGGTGCGCTTAGCACGCTCACAGGCGGAG 39609 Query 7367 CGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAAC 7426 || | |||||||| |||||| | || ||| || || || ||| | || || | ||| Sbjct 39610 CGGAGACGACGAACGGCACGGGCGTCACCAGAGATGTCGAGCTTGTTCTTGCGCTCGAAC 39669 Query 7427 TCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCC 7486 || | |||||| |||||| ||||| || |||||||| | ||| || || Sbjct 39670 TCCTTCTTGAAGTGCTCAAGGAGGGCGTTGTCGAAGTCCTCACCACCAAGGTGGGTGTCA 39729 Query 7487 CCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAAC 7546 || ||||| || ||||| | |||| ||| || ||||| | | ||||||||| || Sbjct 39730 CCAGCGGTGGCCTTGACGGCGAAGACACCACCGGTGATGTTAAGGAGCGAAACATCGAAG 39789 Query 7547 GTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGT----CGTCTTTGTTCTTATC 7602 || || || || || || | || || |||||| | ||| || ||||| || Sbjct 39790 GTTCCTCCTCCGAGATCGTAGATAAGAACGTTCTTCTCGGTGGACGACTTTGAG----TC 39845 Query 7603 GAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGA 7651 ||||||||| ||||| || || || || || || || || ||||| ||| Sbjct 39846 GAGACCGTAAGCGATGGCGGCGGCGGTGGGCTCGTTGATGATACGGAGA 39894 Score = 122 bits (134), Expect = 1e-22 Identities = 282/422 (67%), Gaps = 6/422 (1%) Strand=Plus/Plus Query 7676 GCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCG 7735 ||||| || || || | || || || ||||| |||||||| ||||| || | ||| || Sbjct 40307 GCATCCTTGGTGGCGAGACGCTGAGAGTCGTTGAAGTAGGCGGGGACGGTGATGACGGCC 40366 Query 7736 TCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATC 7795 | | |||| | ||| |||| | | || ||||| || ||||| |||||||| ||||| Sbjct 40367 TTCTTGACCTCCTTGCCGATCTTGGCCTCGGCGATCTCCTTCATCTTGGTAAGGACCATG 40426 Query 7796 GATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATG 7855 || || ||||| | | | ||||| || || |||||| | | || || || | | Sbjct 40427 GAGGAGATCTCCTGGGGAGAGAACTGCTTGGTCTCACCGAGGTAGTTGACCTCGATGAAG 40486 Query 7856 GGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACC 7915 || | ||| | | || || | | | ||| | | ||| || | | ||| Sbjct 40487 GGGG-AGCCGT--CCTTGTCAATGACGGTGAAGGGCCAGTGCTGCATGTCCTTCTTGACG 40543 Query 7916 TGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGG 7975 | |||| | | ||||| |||||||| ||||| || || || | |||||| Sbjct 40544 TCAGGGTCATCGTATCGGCGACCGATGAGACGCTTGGCATCGAAGACGGTCTGCTTGGGG 40603 Query 7976 TTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAAC 8035 |||||||| | |||||||| || || || ||||| ||||| || | || || || Sbjct 40604 TTCATGGCAGCCTGGTTCTTGGCGGCATCACCGATGAGACGCTC---GCTCTCGGTGAAA 40660 Query 8036 GCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCG 8095 |||||||| || ||||| || || || || |||||||| || || || || || || ||| Sbjct 40661 GCGACGTAAGAGGGGGTGGTGCGGTTACCCTGGTCGTTGGCGATGATCTCGACACGCTCG 40720 Query 8096 TT 8097 || Sbjct 40721 TT 40722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635059386587480