Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq97 302 6e-77 seq544 152 6e-32 seq257 147 3e-30 >seq97 Length=49960 Score = 302 bits (334), Expect = 6e-77 Identities = 918/1395 (66%), Gaps = 35/1395 (3%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| ||||||| ||||| | ||||| || || | || || || || | Sbjct 17915 CCCCAGCACATGCTCATGCGTGTCGCTGTTGGTATTCACGGCCAGGACATCGAGAGTGCT 17974 Query 111672 TTGGAGACATACGACAAGATGTCCCGTG-GTATGTTCATCCACGCAACACCAACCCTCTT 111730 | ||||| ||| || ||||| | ||| || || |||| | ||||||||||| Sbjct 17975 ATCGAGACTTACAACCTCATGTCGCAAAAGTACTTTACTC-ACGCCTCGCCAACCCTCTT 18033 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 ||||||||| || || || || | || ||||||||| |||| | ||||| || Sbjct 18034 CAACGCTGGCACTCCCCATCCTCAGCTCTCGTCCTGTTTCCTTGTTGCCATGAAGGATGA 18093 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 || ||| |||||||||||| ||| |||| |||||| ||||| ||| || || Sbjct 18094 CTCGATCGATGGCATTTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGACCGCCGG 18153 Query 111851 TGGTATCGGGATGCACATCCA-TGATGTCAGAGCCAACAAGTCTCGTA--TTAGAGGTAC 111907 || || || || |||| || || || ||| | | |||||| || || || Sbjct 18154 CGGCATTGGTTTGAACATTCACTGCATTC-GAGGTACT--GGCTCGTACATTGCCGGCAC 18210 Query 111908 AAATGGTCAATCAG--ATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 111965 || ||| |||| | ||||| |||| |||||||| || || ||| ||| || || Sbjct 18211 CAACGGTG--TCAGCAACGGTATCGTTCCCATGCTTCGTGTCTTCAACAACACCGCCCGT 18268 Query 111966 TATGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCA 112019 || || |||| | ||| ||||| | || | | || |||| ||||||| Sbjct 18269 TACGTCGACCAGGGTGGTAACAAGCGTCCC---GGTGCCTTTGCCATCTACATTGAGCCT 18325 Query 112020 TGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCG 112079 |||||| ||||| || | |||||||| || ||||| ||||| ||| | || || | Sbjct 18326 TGGCACTCGGATGTCTTTGAGTTCCTCGACTTGCGCAAGAACCACGGTAAGGAAGAAGTT 18385 Query 112080 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 112139 || ||| || ||||||| |||||||||| |||| ||||||||||||||||| |||||| Sbjct 18386 CGTGCCCGTGAACTCTTCTACGCTCTCTGGGTTCCCGATCTCTTCATGAAGAGGGTTGAG 18445 Query 112140 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTG 112199 ||| ||| | ||||| ||| | || || || || ||||||||| | || | Sbjct 18446 CAGAACGGCGAATGGTCGCTCATGTGCCCCAACGAGTGCCCCGGTCTCGCTGACTGCTAC 18505 Query 112200 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCG-AC 112258 |||||||||||||| |||||| ||||||| ||| |||| | | ||| || Sbjct 18506 GGTGAGGAGTTTGAGCGTCTCTACGAGCGTTACGAGGCTGAAGGTCGTTCCA-AGCGCAC 18564 Query 112259 GGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 112317 || | || | || | | ||| | || || ||| |||| || ||||||||||||| | Sbjct 18565 CGT-CAAGGCTCAGAAGCTCTGGTACGCCATCCTCGAGTCGCAGACCGAGACTGGTAACC 18623 Query 112318 CATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 112377 | | || || ||||| ||||| |||| ||| || || ||||| | ||| | Sbjct 18624 CCTTCATCCTCTACAAGGACGCTGCCAACCGCAAGTCCAACCAGAAGAACCTCGGTACTA 18683 Query 112378 TCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 112437 ||||| | |||||| | || || || ||| | || | | | |||||| |||| Sbjct 18684 TCAAGTGCTCCAACTTGTGCACTGAGATCATCGAGTACAGTGCTCCCGATGAGGTTGCTG 18743 Query 112438 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTG 112497 | || ||||| || || |||||||| |||| | | || || | || ||| | | Sbjct 18744 TTTGCAACCTTGCCTCCATCGCTCTTCCCACCTTCATCGACCCTGTCACCAAGGTCTACG 18803 Query 112498 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTG 112557 | || | | ||||| ||| | || || || || ||| | |||| | || | Sbjct 18804 ACTACAAGCGTTTGCACGAGGTTGCCAAGGCTATCTGCAAGAACTTGAACAAGATCATCG 18863 Query 112558 ATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 112617 | | || | ||||| |||||| |||||| ||||| ||| | ||||| || || | Sbjct 18864 ACATCAACTACTACCCTGTTGAGGAGGCTCGTCGTTCTAACATGCGTCACCGCCCTATCG 18923 Query 112618 GTCTCGGTGTCCAAGGTCTCGCGGATGTATTCAT--TCTTTGTCGCCACGCATTTGATTC 112675 || ||||||| || ||||| || |||| ||||| || | | | |||| || || || Sbjct 18924 GTATCGGTGTTCAGGGTCTTGCCGATGCCTTCATGATCATGG--GTTACGCCTTCGAATC 18981 Query 112676 CGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGA 112735 ||| || | | || | | || || ||||| || || || ||||||||||| Sbjct 18982 GCCCGAGGCTCGTCGATTGAACGTCCAGATCTTCGAGACCATCTACCATGCCGCTCTTGA 19041 Query 112736 GGCGA--GTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCA 112793 |||| || | |||||||| | | | || | || || |||| | || ||||| Sbjct 19042 -GCGATCGTGC-GAGTTGGCTCAAGAGCACGGCACCTACGAGACCTACGCCGGCTCTCCT 19099 Query 112794 GCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGC-TTCACTACGA 112852 ||||| || || | || || | || ||||||| || | || | || | || Sbjct 19100 GCTTCCCAGGGTGAACTCCAGTACGACATGTGGG-GTGTCACTCCTTCCGATCTTTGGGA 19158 Query 112853 CTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGC 112912 ||||| ||||||| ||| || | ||||| || ||| || ||| | || Sbjct 19159 CTGGGCTAGCCTCAAGGCCAAGATCGCCAAGCACGGTCTCCGCAACTCGCTCTTGCTCGC 19218 Query 112913 ACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTA 112972 || ||||| || || || || || ||||||||| || ||||| || || ||||| Sbjct 19219 TCCCATGCCTACCGCATCTACAAGTCAGATCTTGGGTTTCAACGAATGTTTCGAGCCCTA 19278 Query 112973 CACGACGAACATCTA 112987 ||| | |||||||| Sbjct 19279 CACCTCCAACATCTA 19293 >seq544 Length=9533 Score = 152 bits (168), Expect = 6e-32 Identities = 123/149 (83%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 102172 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 102231 ||||||| ||||| ||| | || |||||| || ||||||||||||||||| ||||| | Sbjct 3614 CCTTTGCAGAGCGTCTCGTTGCCTTTGCGGCCGTAGAGGGTATCTTCTTCTCCGGTTCTT 3555 Query 102232 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 102291 || | |||| | |||||||||||||| ||||||||||| |||||| ||||||||||| Sbjct 3554 TCGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTCACCTTCTCCAACG 3495 Query 102292 AGCTTATCTCTCGTGACGAGGGACTCCAC 102320 |||| ||||| || |||||||| || ||| Sbjct 3494 AGCTCATCTCCCGCGACGAGGGTCTTCAC 3466 >seq257 Length=26072 Score = 147 bits (162), Expect = 3e-30 Identities = 264/381 (69%), Gaps = 6/381 (2%) Strand=Plus/Plus Query 176689 CTTGAGAAGACTTGGCCAGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTGGGA 176748 |||||| || ||| |||||| || | | |||| |||||||||||||| || || Sbjct 23593 CTTGAGCAGCGATGGGTAGAAGTGGTCGAGGAAGTTGATGATGAGACCCTTGATATGCGA 23652 Query 176749 ACCGTCGTTATCGGCATCCGTCATGATCATGAGACGACCATACCG-AAGCTCGGAAACAT 176807 ||| |||| ||| ||| ||||||||||||| || || || || ||||| | ||| | Sbjct 23653 ACCATCGTGATCCTGATCGGTCATGATCATGATACTGCCGTATCGCAAGCT-GCTAACGT 23711 Query 176808 CTTGATAGTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAACTCTTGGT 176867 | |||| | || || ||||| ||||| | |||| ||||| | |||| |||| || Sbjct 23712 CGAGATATTGTTTGCCGTGTTGCAGACCGAGAATCTCCTTGATGGCTTTGATCTCTGCGT 23771 Query 176868 TTGATGTGAGCTGTGTGACAGAGGCATCACGAACATTCTTACACTTCCCACGAAGAGGGA 176927 | ||| ||| | || || |||||||| || | ||| || || || |||| Sbjct 23772 TCTTCATGATCTGATCGTGAGTAGCCTCACGAACGTTGAGAAGCTTACCGCGGAGCGGGA 23831 Query 176928 AGACACCGTAGTGATCGCGACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAG 176987 |||||||||||| || ||||| || || ||||| ||||| ||||| | || || | Sbjct 23832 AGACACCGTAGTTGTCACGACCCACTTCAACAAGACCGGCAACAGCGAGAGCCTTGGCTG 23891 Query 176988 AATCACCCTCTGTCACGATGAGTGTACACTTGCCAGATT--GTGCCGTACCCGCCTTGTT 177045 | ||||| || || | ||||||||||| | || || |||| ||| || ||||| Sbjct 23892 AGTCACCTTCGGTGAGAATGAGTGTACAGTCCTTAGCTTTCCTGCC--ACCTGCATTGTT 23949 Query 177046 CGCATCATCCAATTTGGGAAT 177066 ||||| || | ||||| || Sbjct 23950 GGCATCTTCGAGCTTGGGGAT 23970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620670649937840