Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq97 297 2e-75 seq10 114 2e-20 seq257 84.2 3e-11 >seq97 Length=49960 Score = 297 bits (328), Expect = 2e-75 Identities = 1128/1744 (65%), Gaps = 55/1744 (3%) Strand=Plus/Minus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467 ||||| || || |||| || |||||||| |||||| |||| | ||||| |||| Sbjct 19638 CGAAGGTAGTAGGTACCGGTCTTGAGACCCTTCTTCCAACCGTAGAAGTGCATCGAAGTC 19579 Query 109468 AGTTTG--GAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGA 109525 | | ||||||| ||| | || | ||| | ||| |||||||| |||| Sbjct 19578 AACTGACCGAAAGTG--GGAGCCGACAAGTGGATGTTGAGCGATTGAGACTGGCAAATGA 19521 Query 109526 ATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCT 109585 | ||| || ||||| ||||||||||||||| ||| ||| || ||||| ||||||| Sbjct 19520 AAGCACCTCGGTCAGCGGCCATGTCGATGATAGCCTTCTGGGAGATCTCCCAAACAGTCT 19461 Query 109586 TGTACAAATTCTTGATATCATCGGGAATGTCCACGAT-GTTTTGAATAGAGCCACCAGCC 109644 |||| | ||||||||| ||||| || ||| || ||| || || || ||||| Sbjct 19460 TGTAGAGCTTCTTGATACGGTCGGGGATA-CCAGGAACGTTCTGGATGGAACCACCG--- 19405 Query 109645 TTCACCATGAGA---TCCTTCATCTCTTTCGA-CCAGAGACCGACCTTTTTGAGATCGT- 109699 | | |||| | | |||||| | | ||| ||| | || || ||| ||| Sbjct 19404 TGAGCGATGATACGGTTCTTCAT-TGTGTCGTTCCACAATCCCTGCTCAACGAGTTCGCG 19346 Query 109700 ---CAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGA 109756 |||| | | | ||| |||| || |||||||||| || || || ||||| Sbjct 19345 GAGCAACCA-AGGGTTGACGACCTGGA---ATTCACCAGCGAGGACACGACGAGAGTAGA 19290 Query 109757 TGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTG 109816 |||| | |||||||| |||||||| || ||| || | ||| || || || || | Sbjct 19289 TGTTGGAGGTGTAGGGCTCGAAACATTCGTTGAAACCCAAGATCTGACTTGTAGATGCGG 19230 Query 109817 TGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACC---CTTCG---TCTTTACCCGCT 109870 | ||||||||||| | | || ||| |||||||| ||| | |||| || | Sbjct 19229 TAGGCATGGGAGCGAGCAAGAGCGAGTTGCGGAGACCGTGCTTGGCGATCTTGGCCT--T 19172 Query 109871 CACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTG 109930 | || | || ||| || || || | | ||| |||| |||||| || Sbjct 19171 GAGGC-TAGC---CCAGTCCCAAAGATCGGAAGG---AGTGACACC---CCACATGTCGT 19122 Query 109931 GTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCT 109990 || ||| |||||| | ||||||||| || | | ||||||| | || | | | Sbjct 19121 ACTGGAGTTCACCCTGGGAAGCAGGAGAGCCGGCGTAGGTCTCGTAGGTGCCGTGCTCTT 19062 Query 109991 CGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCAT 110050 ||||||||| | || ||| || || ||||| || || ||||| || || || | | Sbjct 19061 GAGCCAACTCGCACGATCGCTCAAGAGCGGCATGGTAGATGGTCTCGAAGATCTGGACGT 19002 Query 110051 TCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCGCTA 110110 ||| | |||| ||| | ||||||| ||| | || || |||| || | Sbjct 19001 TCAATCGACGAGCCTCGGGCGATTCGAAGGCGTAACCCATGATCATGAAGGCATCGGCAA 18942 Query 110111 GACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTA 110170 ||||||||||||||| ||| || ||||| || ||||||||| || ||||| || | Sbjct 18941 GACCCTGAACACCGATACCGATAGGGCGGTGACGCATGTTAGAACGACGAGCCTCCTCAA 18882 Query 110171 CGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTT 110230 | ||||| ||||| |||||||| | || | ||||| | || ||| | | | Sbjct 18881 CAGGGTAGTAGTTGATGTCGATGATCTTGTTCAAGTTCTTGCAGATAGCCTTGGCAACCT 18822 Query 110231 CATGGA---GTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAG 110287 | || | | |||| || | || | || || | | || | |||| |||| Sbjct 18821 CGTGCAAACGCTTGTAGTCGTAGACC---TTGGTGACAGGGTCGATGAAGGTGGGAAGAG 18765 Query 110288 CAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCG 110347 | || || ||||| ||||| |||| | ||| || | |||| || | || || | Sbjct 18764 CGATGGAGGCAAGGTTGCAAACAGCAACCTCATCGGGAGCACTGTACTCGATGATCTCAG 18705 Query 110348 TACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATG 110407 | ||||||||||| | ||| || ||| | ||||||||| || || ||| |||| | Sbjct 18704 TGCACAAGTTGGAGCACTTGATAGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTGGCAG 18645 Query 110408 CATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCC 110467 | ||||| ||||| ||| | ||| ||||||| || ||||| |||| ||| ||||| | || Sbjct 18644 CGTCCTTGTAGAGGATGAAGGGGTTACCAGTCTCGGTCTGCGACTCGAGGATGGCGTACC 18585 Query 110468 ATA-CATCGGCGGCGGGGACAGTTGCG-TTAGCGAGACCTTCCTCCTCGTACTTGGTGTA 110525 | | | || | || ||| | |||| || | ||||||| ||||||| ||| Sbjct 18584 AGAGCTTCTG-AGCCTTGAC-GGTGCGCTTGGAACGACCTTCAGCCTCGTAACGCTCGTA 18527 Query 110526 CAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAA 110585 | |||||| |||| ||||| |||| ||||| || || ||| || | Sbjct 18526 GAGACGCTCAAACTCCTCACCGTAGCAGTCAGCGAGACCGGGGCACTCGTTGGGGCACAT 18467 Query 110586 GAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGC 110645 ||| ||||| | || || |||||||||||||||||| || || |||| ||| | || Sbjct 18466 GAGCGACCATTCGCCGTTCTGCTCAACCCTCTTCATGAAGAGATCGGGAACCCAGAGAGC 18407 Query 110646 CGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAA 110705 |||| || |||||| |||| | ||||| | ||| ||||| ||| | || | || Sbjct 18406 GTAGAAGAGTTCACGGGCACGAACTTCTTCCTTACCGTGGTTCTTGCGCAAGTCGAGGAA 18347 Query 110706 GTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG---ACG 110762 || | || |||||||||||| || || | |||| || | || || ||| Sbjct 18346 CTCAAAGACATCCGAGTGCCAAGGCTCAATGTAGATGGCAAAGGCACCGGGACGCTTGTT 18287 Query 110763 ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCC 110822 ||| |||||| || || || || ||| |||||||| | ||||| |||| || || Sbjct 18286 ACCACCCTGGTCGACGTAACGGGCGGTGTTGTTGAAGACACGAAGCATGGGAACGATACC 18227 Query 110823 ATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATG 110882 | | ||| || || || ||| || | | | |||||| ||| || | Sbjct 18226 GTTGCTGACACCGTTGGTGCCGGCAATGTACGAGCCAGTACCTCGAATGCAGTGAATGTT 18167 Query 110883 CATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGTGAGTGTACCATAAA 110941 || |||||| || || || ||| || ||||| ||| |||| || | |||| Sbjct 18166 CAAACCAATGCCGCCGGCGGTCTTGGAGATCATGGCACAGGTCT-TGAGGGTGTCGTAAA 18108 Query 110942 TACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAG 111001 | ||||| ||||| || |||| |||||| || || || || || | ||||||| | | Sbjct 18107 TGCCATCGATCGAGTCATCCTTCATGGCAACAAGGAAACAGGACGAGAGCTGAGGATGGG 18048 Query 111002 GCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTGT 111061 | || || || |||||||| || || | || ||| | || ||| ||||| || Sbjct 18047 GAGTGCCAGCGTTGAAGAGGGTTGGCGAGGCGTGAGTAAAGTACTTTTGCGACATGAGGT 17988 Query 111062 TGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGA 111121 |||| || |||| || | || | ||||||||||||| || || ||||||| Sbjct 17987 TGTAAGTCTCGATAGCACTCTCGATGTCCTGGCCGTGAATACCAACAGCGACACGCATGA 17928 Query 111122 ACAT 111125 ||| Sbjct 17927 GCAT 17924 >seq10 Length=107584 Score = 114 bits (126), Expect = 2e-20 Identities = 218/314 (69%), Gaps = 8/314 (3%) Strand=Plus/Plus Query 11672 TCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCT 11731 ||||||||| ||| || |||||||| || || | ||| || || || | | || | Sbjct 105134 TCTTACCGATAGCATCGATCTCATCAATAAAGATGATGCAAGGAGCGT-GCTTCTTGGCA 105192 Query 11732 GTTCGAAAAGT-TCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTT 11790 | ||| | || || ||||| | | |||||||| || |||||||| ||||| | Sbjct 105193 TTGGCAAACATGTCTCGGACACGGCTAGGACCAACACCAACAAACATCTCGACGAACTCG 105252 Query 11791 GCGGCAGAACACTGAATG-AAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAG 11849 | |||| || ||| | || || ||| || ||||||||| | || || || | Sbjct 105253 GAACCAGAG-ACGGAAAGGAAAGGTACACCAGCCTCACCAGCAGTAGCCTTGGCTAGCAA 105311 Query 11850 AGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCA-- 11907 |||||||| ||||| || | ||| | ||||| ||| ||||| ||||| ||||| ||| Sbjct 105312 GGTCTTACCAGTACCGGGAGGACCGGAGAGAATGGCACCACGAGGGATTTTGGCTCCAAG 105371 Query 11908 CTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTG 11967 |||| ||| ||| |||||||||||||||| |||| |||| || |||||||| Sbjct 105372 CTTCTC--GTACTTCTCGGGCTTCTTGAGGAAGTTGACAAACTCCATAATCTCCTCCTTT 105429 Query 11968 GCGGAGTCGATACC 11981 || ||| ||||| Sbjct 105430 GCTTCGTCCATACC 105443 >seq257 Length=26072 Score = 84.2 bits (92), Expect = 3e-11 Identities = 167/245 (68%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 167357 AACCCGTACCAATACCTTCAGTACCGTTTACCAAAACCATCGGTAGAGTTGGCATGTAAA 167416 |||| ||||| |||||||||| |||||| | | ||| || | |||||||| Sbjct 22746 AACCGGTACCGATACCTTCAGCACCGTTGAGTAGCACCTGTGGCACCACAGGCATGTACC 22805 Query 167417 AGTCGGGTTCAATGGAACGACCATCATCATCCAAGTAGTTGAGAATGGCATCATCTTTGG 167476 | | || || ||| ||||||||||||||| ||| | ||| | || ||||| || Sbjct 22806 ACTGAGGCTCGATGCTCTGACCATCATCATCCAGGTATTCGAGCAAAGCGTCATCGTTCT 22865 Query 167477 GATCGAAGAGCTTTCGAGCCTCCTTGGTAAGCTTCGTAAAGATGTACCTCGTCTGAGAC- 167535 || |||||| || | ||||| ||| || ||||| ||||| | | ||| | Sbjct 22866 GAGGGAAGAGGGCGCGTGTGATCTTGGGCAGCGCGGTGAAGATATACCT-GGCCGAGGCA 22924 Query 167536 GCATCCTTGCCACCCATGAGGCGTGTACCAAATTGACCACATGGCTCGAGAAGATTGATG 167595 ||||| || ||||| | | || ||||| |||||||| | |||||||| | |||| | Sbjct 22925 GCATCTTTACCACCGAGCAAACGAGTACCGAATTGACCCCTAGGCTCGAGCAAGTTGACG 22984 Query 167596 TTATT 167600 || || Sbjct 22985 TTGTT 22989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588907921736600