Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq430 120 2e-22 seq23 102 5e-17 seq245 100 2e-16 >seq430 Length=15258 Score = 120 bits (132), Expect = 2e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| |||||||||||| ||||| |||| || ||||| |||||||| || Sbjct 1173 TCCTTCTGGATGTTGTAGTCCGAAAGGGTTCGTCCATCCTCAAGCTGCTTTCCGGCGAAA 1114 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| || | || | ||||||||||| |||||| |||||| Sbjct 1113 ATGAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCCTGAATCTTGGCCTTGACGTTG 1054 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||| || |||| ||| ||||| || || || |||||||| || Sbjct 1053 TCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTACCGGTCAGAGTCTTTACG 994 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 993 AAGATCTGCAT 983 Score = 111 bits (122), Expect = 1e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 |||||| | ||||| || || || |||||||| || || || || || ||||| |||| Sbjct 1651 CAAAACAAGGTGAAGAGTACTCTCCTTCTGAATATTGTAATCAGACAGAGTTCGTCCATC 1592 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 |||| |||||| || ||||| || | ||| |||||||| | || | || |||||||| Sbjct 1591 CTCCAACTGTTTACCAGCAAAAATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTC 1532 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 |||||| ||||| | |||| || | || || || | || ||||| Sbjct 1531 CTGAATCTTGGCCTTGACATTGTCAATCGTGTCCGAAGATTCGACTTCCAAAGTGATGGT 1472 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| ||||| ||||| ||||||||||||||| Sbjct 1471 CTTTCCTGTGAGCGTCTTGACAAAGATCTGCATA 1438 >seq23 Length=89368 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| |||||||| || | || |||| || ||||| || || || || Sbjct 50410 TCTTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCATCCTCGAGCTGCTTACCAGCGAAG 50469 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || ||||| ||||| || | || | || |||||||| ||||| |||||| Sbjct 50470 ATGAGTCGCTGCTGATCAGGTGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTG 50529 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || || ||| || |||| ||| ||||| || || ||||| ||||| ||| Sbjct 50530 TCAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACA 50589 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 50590 AAGATCTGCAT 50600 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| |||||| | || |||| || ||||| || || ||||| Sbjct 50182 TCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATCTTCAAGCTGCTTGCCTGCAAAG 50241 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | |||||||| || |||||| || ||| Sbjct 50242 ATAAGGCGCTGCTGGTCAGGGGGAATACCCTCCTTATCCTGAATCTTGGCCTTAACGTTG 50301 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| || || || || | || || || || || || | |||||| || Sbjct 50302 TCGATGGTGTCAGAGGATTCGACCTCAAGAGTGATAGTCTTGCCGGTCAAAGTCTTGACG 50361 Query 34971 AAGATCTGCATA 34982 ||||| |||||| Sbjct 50362 AAGATTTGCATA 50373 >seq245 Length=26962 Score = 100 bits (110), Expect = 2e-16 Identities = 151/211 (72%), Gaps = 8/211 (4%) Strand=Plus/Minus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| ||| || ||||| ||||| || ||||| ||| | || |||| || ||||| Sbjct 24095 GTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGACCATCTTCGAGCTG 24036 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 || |||||||| || || || ||||| || | || | || |||||||| ||||| Sbjct 24035 CTTGCCGGCAAAGATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTT 23976 Query 34898 CTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTC 34953 ||||| || | ||||| | ||| | ||| || |||| ||| ||||| || | Sbjct 23975 GGCCTTGAC--AT--TGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTAC 23920 Query 34954 CCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||||||| || || |||||||||||||| || Sbjct 23919 CCGTGAGGGTTTTAACAAAGATCTGCATCTT 23889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324597014503416