Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq278 145 6e-30 >seq278 Length=24804 Score = 145 bits (160), Expect = 6e-30 Identities = 399/613 (65%), Gaps = 34/613 (6%) Strand=Plus/Plus Query 29761 AGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCC 29820 ||| |||| ||||| || || | ||||||||| |||| ||||| || |||||||| Sbjct 16208 AGTTTGGGGAAGGGAAGTGGTTCTCGTTCGAGCTGAATCTTGAGCGGCTCTACGTGATCT 16267 Query 29821 AGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACG 29880 ||||||||||||||| |||| | | || | || || || | ||||| Sbjct 16268 TTGTAGACGTGAGCGTCACCCATTGAAAGAACGAGTTCCTTTGGCTCGCAATCAGTGACT 16327 Query 29881 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCC 29940 | ||| |||||||| ||||| | || |||||| || ||||| ||||| || || | || Sbjct 16328 TTAGCGATCATGTAAGTGAGCAAAGCGTAGCTAGCAATGTTGAAGGGGACTCCCAATCCA 16387 Query 29941 ATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCT---------CT----CCGTCGC- 29986 | || | || | ||||| | |||||||||||||| || || | || Sbjct 16388 AGATCGCAGGAACGTTGGTACATCTGACACGAGAGCTGCTTCCTGCCTTGACCCTTGGCA 16447 Query 29987 ------TCA----------CGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATG 30030 ||| || | || ||||| | |||| || || |||||||||||| Sbjct 16448 TATGCGTCAAGGTTGGAGACGAAGAATTGACAGAACATGTGACAAGGTGGAAGAGCCATG 16507 Query 30031 AGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTC 30090 ||| | |||||||||||||| |||| | | ||| | | || ||||||||| Sbjct 16508 AGGGAGAGATCTTTGGGGTTCCATGCGCTGAGCAAGATTCTGCGATCGGTAGGGTTGTTC 16567 Query 30091 CTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTC--TGCCC 30148 |||| ||| | | | | | || || || || ||| || | |||||| || | Sbjct 16568 TTGATCTTGTCGATGACATCGCGGAGTTGGTCGACGCCCTGACCGGTGTAGTCGGTGTCA 16627 Query 30149 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30208 || || |||| || || || ||||| | ||| ||||| ||||| || || |||| || Sbjct 16628 CAATCTC--TGTATTCGGCGCCAAAATGACGCCATTGGAAACCGTAGACTGGACCCAAGT 16685 Query 30209 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268 | || || ||||||| || || | ||| | || |||| ||||||||| | | Sbjct 16686 CACCTTCCCTTCTGTGCTGCAATCCTCGAGAGTCAAGGAACTCTCGTGAACCGTTGCCAT 16745 Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 30328 ||||||| | || || || || | |||| ||||||| || || || |||| Sbjct 16746 CCCAGATGTGCACACCTTTGTCTGTGAGCAACTTGGAGTCGGTCTTTCCAGCAACAAACC 16805 Query 30329 ACAGCAGCTCCTC 30341 | || |||||||| Sbjct 16806 AGAGTAGCTCCTC 16818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408571549690331