Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq15 138 7e-27 seq430 111 1e-18 seq23 100 2e-15 >seq15 Length=102925 Score = 138 bits (152), Expect = 7e-27 Identities = 365/551 (66%), Gaps = 6/551 (1%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || || ||||| ||| | || ||||| ||| ||||| || || |||||||||| Sbjct 87573 GCCATCGGTATCGATCTTGGTACTACCTACTCCTGTGTCGCCGTCTGGCAAAATGACCGT 87632 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || | |||||||| || || ||||| | || || || |||||||| | || ||| Sbjct 87633 GTCGAGGTCATTGCCAACGATCAGGGTAACCGCACCACCCCCTCATATGTCGCCTTCACT 87692 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || | || | ||| || ||||||||||| || | || | || |||||| ||| Sbjct 87693 GACTCGGAGCGTCTCATCGGAGATGCTGCCAAGAACCAGGTCGCCATGAATCCTCATAAC 87752 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 ||| | || |||||||| | | ||||| || || || || || || || || || Sbjct 87753 ACTGTCTTCGATGCTAAGCGTCTTATTGGCCGCAAGTTCGACGACCCCGAGGTTCAGTCC 87812 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATAT-AGAAGC 474627 || ||| || |||||||| |||| | || || || || || | || | | | Sbjct 87813 GACATGAAGCACTGGCCTTTCGAGGTCGTCAACACCGGCGGCAAGCCCCAGATCCGCATC 87872 Query 474628 -AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAG 474686 | |||| | ||||| | || || | || ||| | || ||||| |||||| | Sbjct 87873 GAGTACAAG--GGTGAGAAGAAGACCTTCACCCCCGAAGAGATCTCTTCCATGGTTCTCC 87930 Query 474687 CCAAAATGAAACAAACCG-CGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATT 474745 ||| ||| | |||| |||| | || || || || | ||||| || | Sbjct 87931 TCAAGATGCGTGAGACCGCCGAG-GCCTACCTCGGTGGCACCGTCAAGGATGCCGTCGTC 87989 Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 || || || || || || || |||||||| ||||| || || || ||||| || | ||| Sbjct 87990 ACCGTCCCCGCTTACTTCAACGATTCTCAGCGTCAGGCTACCAAGGATGCCGGTATCATT 88049 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 | ||||| || ||| | ||||| || || || || || || ||||| | ||||| ||| Sbjct 88050 TCGGGTCTCAACGTTATGCGTATCATCAACGAGCCCACTGCTGCCGCCATCGCTTACGGT 88109 Query 474866 CTTGATAAGAA 474876 || || ||||| Sbjct 88110 CTCGACAAGAA 88120 >seq430 Length=15258 Score = 111 bits (122), Expect = 1e-18 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||||||||| | ||||| ||||| ||||| || || || ||| ||||||| ||||| Sbjct 1660 ACGAAGACGCAAAACAAGGTGAAGAGTACTCTCCTTCTGAATATTGTAATCAGACAGAGT 1601 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || ||| || | || || ||||||||||| | || || || ||||||||||| || Sbjct 1600 TCGTCCATCCTCCAACTGTTTACCAGCAAAAATCAATCGCTGCTGGTCAGGAGGAATACC 1541 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||||||| |||||||| |||||| ||||| || || | | | | || ||| Sbjct 1540 TTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATCGTGTCCGAAGATTCGACTTCCAA 1481 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||| ||||| || || || || Sbjct 1480 -AGTGATGGTCTTTCCTGTGAGCGTCTTGACAAAGATCTG 1442 >seq23 Length=89368 Score = 100 bits (110), Expect = 2e-15 Identities = 156/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATG--AAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGA 480608 |||||||||||| |||||||| | ||| || || || || || || || | || Sbjct 50151 ACGAAGACGGAGGACAAGATGCAAGGTGGAC--TCCTTCTGAATGTTGTAGTCGGAAAGG 50208 Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668 || | | ||||||||| ||||| || ||||| ||||| || || || ||||| ||||| Sbjct 50209 GTACGGCCATCTTCAAGCTGCTTGCCTGCAAAGATAAGGCGCTGCTGGTCAGGGGGAATA 50268 Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCA 480728 || ||||| || |||||||| || || || || || |||| | | ||| Sbjct 50269 CCCTCCTTATCCTGAATCTTGGCCTTAACGTTGTCGATGGTGTCAGAGGATTCGACCTCA 50328 Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||| || ||||| | |||||| ||||| ||||| Sbjct 50329 AGAGTGATAGTCTTGCCGGTCAAAGTCTTGACGAAGATTTG 50369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267782551303556