Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq363 102 9e-17 >seq363 Length=19200 Score = 102 bits (112), Expect = 9e-17 Identities = 135/185 (73%), Gaps = 2/185 (1%) Strand=Plus/Plus Query 138171 AGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAG 138230 || |||| || || | ||| || || || ||||| |||||||| || ||||| || || Sbjct 15054 AGGTGTTCAGCAACGCAAATGGGTCCAACACCAGGTCCTCCACCGCCGTGTGGGATGGAG 15113 Query 138231 AATGTCTTATGTAAATTTAGATGACATACATCTGCACC-ATAGTCACATGGTTTTGCTAG 138289 || ||||| || || || ||||| |||||| ||||| || || | |||| | || Sbjct 15114 AAGGTCTTGTGCAAGTTGAGATGCGTTACATCGGCACCCATGATCGCTGGGTTGGTCAAG 15173 Query 138290 ACCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAAC 138349 | ||||| || | || || ||||||||||| || ||||| || || ||||| ||||| Sbjct 15174 GCA-ACCTGAGCCTGGAGGTTGGCACCATCGAGGTACACCTGTCCGCCGTTGTCGTGAAC 15232 Query 138350 GATCT 138354 ||||| Sbjct 15233 GATCT 15237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578931475022440