Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq97 192 7e-44 seq257 145 9e-30 seq544 116 4e-21 >seq97 Length=49960 Score = 192 bits (212), Expect = 7e-44 Identities = 897/1401 (64%), Gaps = 45/1401 (3%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| ||||||| ||||| | || || ||||| | ||||| || || Sbjct 17915 CCCCAGCACATGCTCATGCGTGTCGCTGTTGGTATTCACGGCCAGGACATCGAGAGTGCT 17974 Query 75272 TTGGAGACATACGACAAGATGTCCCAAG-GTATGTTCATTCACGCAACACCAACCCTCTT 75330 | ||||| ||| || ||||| ||| ||| || | |||||| | ||||||||||| Sbjct 17975 ATCGAGACTTACAACCTCATGTCGCAAAAGTACTTT-ACTCACGCCTCGCCAACCCTCTT 18033 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 ||| ||||| || || || ||| | || || |||||| | |||| ||||| || Sbjct 18034 CAACGCTGGCACTCCCCATCCTCAGCTCTCGTCCTGTTTCCTTGTTGCCATGAAGGATGA 18093 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 ||| ||| | || || || | || || | | ||||| ||||| ||| || || Sbjct 18094 CTCGATCGATGGCATTTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGACCGCCGG 18153 Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTA--TTCGGGGGACA 75508 || ||||| || |||| || | ||| | | |||||| || || || Sbjct 18154 CGGCATTGGTTTGAACATTCACTGCATTCGAGGTACTGG--CTCGTACATTGCCGGCACC 18211 Query 75509 AATGGTCAATCAG--ATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 75566 || ||| |||| | ||||| |||| |||||||| || || ||| ||| || || | Sbjct 18212 AACGGTG--TCAGCAACGGTATCGTTCCCATGCTTCGTGTCTTCAACAACACCGCCCGTT 18269 Query 75567 ATGTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCAT 75620 | || | || | || ||||| | || || | || ||||| | || || | Sbjct 18270 ACGTCGACCAGGGTGGTAACAAGCGTCCC---GGTGCCTTTGCCATCTACATTGAGCCTT 18326 Query 75621 GGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTC 75680 |||| | ||| || | |||||||| || || || ||||| ||| | ||||| | || Sbjct 18327 GGCACTCGGATGTCTTTGAGTTCCTCGACTTGCGCAAGAACCACGGTAAGGAAGAAGTTC 18386 Query 75681 GGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGG 75740 | | || ||||| | | || ||| |||| || || ||||||||| |||||||| Sbjct 18387 GTGCCCGTGAACTCTTCTACGCTCTCTGGGTTCCCGATCTCTTCATGAAGAGGGTTGAGC 18446 Query 75741 AGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGG 75800 || || ||||||| || | || || || || || |||||| | ||| | Sbjct 18447 AGAACGGCGAATGGTCGCTCATGTGCCCCAACGAGTGCCCCGGTCTCGCTGACTGCTACG 18506 Query 75801 GTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCG-ACT 75859 ||||||||||||| |||||| || || | || ||| | |||| ||| || Sbjct 18507 GTGAGGAGTTTGAGCGTCTCTACGAGCGTTACGAGGCTGAAGGTCGTTCCAA-GCGCACC 18565 Query 75860 GTACCAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACC 75918 || | || | | || | | ||| | || || ||| | || ||||| |||||||| | || Sbjct 18566 GT-CAAGGCTCAGAAGCTCTGGTACGCCATCCTCGAGTCGCAGACCGAGACTGGTAACCC 18624 Query 75919 ATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAAT 75978 | || || |||||||| ||| ||| ||| ||||| ||||| | || || || Sbjct 18625 CTTCATCCTCTACAAGGACGCTGCCAACCGCAAGTCCAACCAGAAGAACCTCGGTACTAT 18684 Query 75979 CAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGT 76038 |||| |||| || | ||||| || || | ||||||| | | |||||| ||||| Sbjct 18685 CAAGTGCTCCAACTTGTGCACTGAGATCATCGAGTACAGTGCTCCCGATGAGGTTGCTGT 18744 Query 76039 TTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGA 76098 |||||| | || || ||||| ||||| | | ||| || || ||| | Sbjct 18745 TTGCAACCTTGCCTCCATCGCTCTTCCCACCT---TCA---TCGACCCTGTCACCAAGGT 18798 Query 76099 TTATGA--AAAA----CTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGT 76152 || || | || | || || | | ||| | | ||| || | ||| | Sbjct 18799 CTACGACTACAAGCGTTTGCACGAGGTTGCCAAGGCTATCTGCAAGAACTTGAACAAGAT 18858 Query 76153 CATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACC 76212 ||| |||| || | || || |||||| || || ||||| ||||| ||| | || Sbjct 18859 CATCGACATCAACTACTACCCTGTTGAGGAGGCTCGTCGTTCTAACATGCGTCACCGCCC 18918 Query 76213 TATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGA 76272 ||| ||| | |||||||| ||||| || |||| || || | | ||||| || || Sbjct 18919 TATCGGTATCGGTGTTCAGGGTCTTGCCGATGCCTTCATGATCATGGGTTACGCCTTCGA 18978 Query 76273 TTCAGATGAAGC-CAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCC 76331 || || || | || |||| | | ||||| || ||||| || || || | | Sbjct 18979 ATCGCCCGAGGCTCGTCGA-TTGAACGTCCAGATCTTCGAGACCATCTACCATGCCGCTC 19037 Query 76332 TGGAGGCGA-GTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCT 76390 | || |||| || || |||||| ||| || || |||| ||||| | | || ||| Sbjct 19038 TTGA-GCGATCGTGCGAGTTGGCTCAAGAGCACGGCACCTACGAGACCTACGCCGGCTCT 19096 Query 76391 CCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAAC-CAAGCTCAAC-- 76447 || || ||||| || | || |||| || |||||| |||| || | | | | Sbjct 19097 CCTGCTTCCCAGGGTGAACTCCAGTACGACATGTGG---GGTGTCACTCCTTCCGATCTT 19153 Query 76448 TACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTG 76507 | ||||||| | ||||||| ||| || | ||||| || ||| || ||| Sbjct 19154 TGGGACTGGGCTAGCCTCAAGGCCAAGATCGCCAAGCACGGTCTCCGCAACTCGCTCTTG 19213 Query 76508 ATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAA 76567 | || || ||||| || || || || || ||||||||| || ||||| || || Sbjct 19214 CTCGCTCCCATGCCTACCGCATCTACAAGTCAGATCTTGGGTTTCAACGAATGTTTCGAG 19273 Query 76568 CCATACACAACAAACATCTAC 76588 || ||||| | ||||||||| Sbjct 19274 CCCTACACCTCCAACATCTAC 19294 >seq257 Length=26072 Score = 145 bits (160), Expect = 9e-30 Identities = 281/409 (69%), Gaps = 12/409 (3%) Strand=Plus/Minus Query 13514 CTCAAGAAGACCGATGGTGCTCGCAAGT---CCAAAATTACCGGTATTCCCAAGTTGGAT 13570 |||||||||||||| ||| | |||| ||| || ||| || |||||| | || Sbjct 24012 CTCAAGAAGACCGACGGT---CACAAGCGTACCAGGATCACCAACATCCCCAAGCTCGAA 23956 Query 13571 GACGCGAACAAGGCGGGTACGGCAC--AATCTGGAAAGTGTACTCTCATTGTCACAGAGG 13628 || || ||||| || ||| |||| || || | ||||| |||||| |||| || | Sbjct 23955 GATGCCAACAATGCAGGT--GGCAGGAAAGCTAAGGACTGTACACTCATTCTCACCGAAG 23898 Query 13629 GTGATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCTCTGTCGTTGGTCGTGATCACTACG 13688 |||| || || || | ||||| ||||| ||||| || || |||||||| |||||| Sbjct 23897 GTGACTCAGCCAAGGCTCTCGCTGTTGCCGGTCTTGTTGAAGTGGGTCGTGACAACTACG 23838 Query 13689 GTGTGTTCCCACTTCGCGGTAAATGTAAGAATGTTCGGGACGCTTCGGTGGCACAGCTCA 13748 |||| ||||| || |||||||| | || ||||| || ||| | | ||| ||| Sbjct 23837 GTGTCTTCCCGCTCCGCGGTAAGCTTCTCAACGTTCGTGAGGCTACTCACGATCAGATCA 23778 Query 13749 CATCAAACCAGGAGTTCAACGATCTCAAGAAGATCCTTGGTCTTCAACAAGGAAAAGACT 13808 ||| ||| |||| | ||||| |||| || ||||| ||||| || ||| | | Sbjct 23777 TGAAGAACGCAGAGATCAAAGCCATCAAGGAGATTCTCGGTCTGCAACACGGCAAACAAT 23718 Query 13809 ACCAAGATGTTTCTGAACTT-CGCTATGGTCGTCTTATGATTATGACAGATGCCGATAAT 13867 | | || ||| | ||| || || || || | ||||| ||||| ||| ||| | Sbjct 23717 ATCTCGACGTTAGC-AGCTTGCGATACGGCAGTATCATGATCATGACCGATCAGGATCAC 23659 Query 13868 GATGGTTCTCACATCAAGGGTCTCATCCTAAATATGATCCACTACTTCT 13916 |||||||| || ||||||||||||||| | || | || || |||||| Sbjct 23658 GATGGTTCGCATATCAAGGGTCTCATCATCAACTTCCTCGACCACTTCT 23610 >seq544 Length=9533 Score = 116 bits (128), Expect = 4e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 65069 CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCAT 65128 |||| || ||||| || |||| |||||| || |||||||||||||||||||| || | Sbjct 3614 CCTTTGCAGAGCGTCTCGTTGCCTTTGCGGCCGTAGAGGGTATCTTCTTCTCCGGTTCTT 3555 Query 65129 TCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATG 65188 || | |||| | ||| | |||||||| ||||||||||| || || |||||| || | Sbjct 3554 TCGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTCACCTTCTCCAACG 3495 Query 65189 AACTTATTTCCCGAGATGAGGGTCTCCAC 65217 | || || ||||| || |||||||| ||| Sbjct 3494 AGCTCATCTCCCGCGACGAGGGTCTTCAC 3466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596500644011360