Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq97 127 2e-24 seq245 118 1e-21 seq430 116 3e-21 seq23 91.5 1e-13 >seq97 Length=49960 Score = 127 bits (140), Expect = 2e-24 Identities = 929/1472 (63%), Gaps = 52/1472 (4%) Strand=Plus/Minus Query 138501 GTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGG 138560 ||| | |||||| |||||||| || | || |||||| ||| |||||| |||| | || Sbjct 19333 GTTGACGACCTGGAATTCACCAGCGAGGACACGACGAGAGTAGATGTTGGAGGTGTAGGG 19274 Query 138561 CTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCAC 138620 ||| || |||||||| |||| |||||| || | ||||| |||||| || | Sbjct 19273 CTCGAAACATTCGTTGAAACCCAAGATCTGACTTGTAGATGCGGTAGGCATGGGAGCGAG 19214 Query 138621 CAAAAGAGAATTCCGTAAACCGTGAAGCTTGAT--TCGTT-CCTTGAGCGACGACCAGTC 138677 ||| || || || || | |||||| |||| || | ||||||| | |||||| Sbjct 19213 CAAGAGCGAGTTGCGGAGACCGTG---CTTGGCGATCTTGGCCTTGAGGCTAGCCCAGTC 19157 Query 138678 CCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGG 138737 ||| | |||| ||| | |||||| |||||||| | ||| || || Sbjct 19156 CCAAAGATCGGAAGGAGTGACACCCCACATGTCGTACTGGAGTTCACCCTGGGAAGCAGG 19097 Query 138738 ACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTT-GCTCGCCTCGA 138796 | ||| |||| | ||||| || |||||| ||||||||| | |||| || | Sbjct 19096 AGAGCCGGCGTAGGTCTCGTAGGTGCCGTGCTCTTGAGCCAACTCGCACGATCGC-TCAA 19038 Query 138797 GCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGG---GCCTCGG-CG 138852 | || ||| ||| || || ||| ||||| || |||||| ||||||| || Sbjct 19037 GAGCGGCATGGTAGATGGTCTCGAAGATCTGGACGTT---CAATCGACGAGCCTCGGGCG 18981 Query 138853 CTCTCGTACGGCATG-CGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCC 138911 | ||| | ||| | | | ||| |||| || ||||| || || || || || | || Sbjct 18980 AT-TCGAA-GGCGTAACCCATGATCATGAAGGCATCGGCAAGACCCTGAACACCGATACC 18923 Query 138912 GACAGGGCGATGGCGCAGATTTGACGCTTTTGCGGCTTCGATAGGATAATAGTTTACATC 138971 || |||||| || |||| || || || | || | ||| || ||||| | || Sbjct 18922 GATAGGGCGGTGACGCATGTTAGAACGACGAGCCTCCTCAACAGGGTAGTAGTTGATGTC 18863 Query 138972 GATGATTTTGTTTAAATT-TCGCACGACCACCTTAGTCGTATGCTTTAATCGTTCAAAAT 139030 |||||| ||||| || || | ||| || |||| | | | || || | | | Sbjct 18862 GATGATCTTGTTCAAGTTCTTGCA-GATAGCCTTGGCAACCTCGTGCAAACGCTTGTAGT 18804 Query 139031 CGTATGTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTA 139090 |||| | || ||| || ||| ||||| || || | | || ||||| | Sbjct 18803 CGTA---GACC---TTG--GT-GACAGGGTCGATGAAGGTGGGAAGAGCGATGGAGGCAA 18753 Query 139091 TGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTAC 139150 |||||| || || || || ||||| | ||||| |||| || || | ||||| || Sbjct 18752 GGTTGCAAACAGCAACCTCATCGGGAGCACTGTACTCGATGATCTCAGTGCACAAGTTGG 18693 Query 139151 TACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAA 139210 |||||||| ||||| | || | || ||| || ||||| ||| || ||||| | Sbjct 18692 AGCACTTGATAGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTGGCAGCGTCCTTGTAGA 18633 Query 139211 GCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAG 139270 | || | || | ||||| || || | ||| | ||| | | | | | || Sbjct 18632 GGATGAAGGGGTTACCAGTCTCGGTCTGCGACTCGAGGATGGCGTACCAGAGCTTCTGAG 18573 Query 139271 C-TTGTATTTGACGCACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAAT 139329 | ||| || ||| | || | | || |||||| |||||||| || || Sbjct 18572 CCTTGACGGTG-CGCTTGGAACGACCTTCAGCCTCGTAACGCTCGTAGAGACGCTCAAAC 18514 Query 139330 CGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACG 139389 ||||||||| ||||| ||| || | |||| || || ||||||||||||||| || Sbjct 18513 TCCTCACCGTAGCAGTCAGCGAGACCGGGGCACTCGTTGGGGCACATGAGCGACCATTCG 18454 Query 139390 CCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCG 139449 |||||| || || | | ||||||| ||||| |||| ||| | |||| | | | || Sbjct 18453 CCGTTCTGCTCAACCCTCTTCATGAAGAGATCGGGAACCCAGAGAGCGTAGAAGAGTTCA 18394 Query 139450 CGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCA 139509 || || |||||| ||| ||| || || ||||| ||||| || || Sbjct 18393 CGGGCACGAACTTCTTCCTTACCGTGGTTCTTGCGCAAGTCGAGGAACTCAAAGACATCC 18334 Query 139510 GCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTG---CCACCTTGATCG 139566 | |||||| || || | |||||||| | || || || ||| ||||| || ||| Sbjct 18333 GAGTGCCAAGGCTCAATGTAGATGGCAAAGGCACCGGGACGCTTGTTACCACCCTGGTCG 18274 Query 139567 ACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTG-TTCC 139625 |||| || | | || ||||| || || | ||| || | | |||| | |||| || Sbjct 18273 ACGTAACGGGCGGTGTTGTTGAAGACACGAAGCATGGGAACGATACCG-TTGCTGACACC 18215 Query 139626 GTTGGTGCTACGGATGGGACTGTTGCGAGCTCGGACGTCATGTACATTG-ATG------C 139678 |||||||| || | || | ||||| | || || | || || ||| | Sbjct 18214 GTTGGTGC------CGGCAATG-TACGAGCCAGTACCTCGAATGCAGTGAATGTTCAAAC 18162 Query 139679 CGATTCCGCCGCCAAATTTGGATATTAAAACGCA-ATCGCGTAATGTCTCGTATATACCT 139737 | || |||||| | ||||| || | | || || | | || ||||| || || Sbjct 18161 CAATGCCGCCGGCGGTCTTGGAGATCATGGCACAGGTCTTG-AGGGTGTCGTAAATGCCA 18103 Query 139738 CTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTG 139797 || ||| |||| ||| | || || || || ||||| || || || | ||| Sbjct 18102 TCGATCGAGTCATCCTTCATGGCAACAAGGAAACAGGACGAGAGCTGAGGATGGGGAGTG 18043 Query 139798 CCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTAC 139857 || || || || || || ||||| || || | || |||||| | | ||| Sbjct 18042 CCAGCGTTGAAGAGGGTTGGCGAGGCGTGAGTAAAGTACTTTTGCGACATGAGGTTGTAA 17983 Query 139858 GTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATA 139917 || ||||| || ||| | || ||| ||||| ||||| |||| ||| ||||| ||||| Sbjct 17982 GTCTCGATAGCACTCTCGATGTCCTGGCCGTGAATACCAACAGCGACACGCATGAGCATG 17923 Query 139918 TGTTGGATCCGTTCGGCCACCGCGCCCTCGAT 139949 || ||| || || || ||| ||| | ||| Sbjct 17922 TGCTGGGGACGCTCAGCAACCTTGCCGTTGAT 17891 >seq245 Length=26962 Score = 118 bits (130), Expect = 1e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| ||||||| || || ||||| || || || ||||| || || | | Sbjct 23891 GATGCAGATCTTTGTTAAAACCCTCACGGGTAAGACCATCACCCTCGAGGTCGAGTCTTC 23950 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| ||||| ||||| || || || ||||| Sbjct 23951 GGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCA 24010 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| | ||||||||||| || ||||| || ||| | | | | || ||||| || Sbjct 24011 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAAGATGGTCGCACCCTCTCGGATTACAA 24070 Query 24883 CATTCAAAAGGAATCGACACTACAC 24907 ||| || ||||| || || || ||| Sbjct 24071 CATCCAGAAGGAGTCCACCCTTCAC 24095 >seq430 Length=15258 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || |||||||| || || || ||||| || || | || Sbjct 983 ATGCAGATCTTCGTAAAGACTCTGACCGGTAAGACCATCACCCTCGAGGTGGAGTCTTCC 1042 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| || || || ||||||||||| Sbjct 1043 GACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGTATTCCTCCCGATCAG 1102 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | || || ||||| || ||||| |||||| ||| | | || || || ||| Sbjct 1103 CAGCGTCTCATTTTCGCCGGAAAGCAGCTTGAGGATGGACGAACCCTTTCGGACTACAAC 1162 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || ||||| ||||| || ||| |||| Sbjct 1163 ATCCAGAAGGAGTCGACCCTCCACCTGGT 1191 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | ||||| || || ||||| |||||||| || || | Sbjct 1211 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATTACTCTCGAAGTCGAGTCCTCG 1270 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || ||||| || || || || || Sbjct 1271 GACACTATCGACAATGTTAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAG 1330 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | |||||||| || || ||||| || || ||| | | || ||||| ||| Sbjct 1331 CAGCGTCTTATCTTTGCTGGAAAGCAGCTCGAAGACGGCCGAACCCTCTCGGATTACAAC 1390 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || ||||||||||| || | || | || |||||||||| || || Sbjct 1391 ATCCAAAAGGAATCCACGTTGCATCTCGTTCTGCGATTGCGAGGTGG 1437 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||||| || || || || || || | ||||| ||| | | Sbjct 1439 ATGCAGATCTTTGTCAAGACGCTCACAGGAAAGACCATCACTTTGGAAGTCGAATCTTCG 1498 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| ||||| || ||||| || || Sbjct 1499 GACACGATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGGTATTCCTCCTGACCAG 1558 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||| ||||| || |||||| |||||||| ||| |||| ||||| || Sbjct 1559 CAGCGATTGATTTTTGCTGGTAAACAGTTGGAGGATGGACGAACTCTGTCTGATTACAAT 1618 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||| ||||| || || ||| | || ||||| Sbjct 1619 ATTCAGAAGGAGAGTACTCTTCACCTTGTTTTGCG 1653 >seq23 Length=89368 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || ||||| || || || || ||||| || || || | Sbjct 50601 GATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTC 50542 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| ||||| ||||| || || || ||||| Sbjct 50541 GGACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCACCTGATCA 50482 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || | ||||| || || || ||||| |||||| | | | || || || || Sbjct 50481 GCAGCGACTCATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGCACTCTCTCGGACTACAA 50422 Query 24883 CATTCAAAAGGAATCGACACTACAC 24907 ||| || || || || || || ||| Sbjct 50421 CATCCAGAAAGAGTCCACTCTCCAC 50397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449845597461160