Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20]
9,247 sequences; 22,572,307 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq245 114 1e-20
seq23 96.9 3e-15
>seq245
Length=26962
Score = 114 bits (126), Expect = 1e-20
Identities = 149/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643
||||| ||||| || || || ||||| ||||||| | ||||||| ||| ||||| ||
Sbjct 24094 TGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGACCATCTTCGAGCTGC 24035
Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703
||||| ||| | || | | |||||||| || ||||| || || ||||| || | ||
Sbjct 24034 TTGCCGGCAAAGATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTG 23975
Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763
|||||| | || | ||||| ||| || || || || || || || || || ||
Sbjct 23974 GCCTTGACATTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTACCCGTG 23915
Query 29764 AAGGTTTTAACAAATATCTGCATTTT 29789
| |||||||||||| |||||||| ||
Sbjct 23914 AGGGTTTTAACAAAGATCTGCATCTT 23889
>seq23
Length=89368
Score = 96.9 bits (106), Expect = 3e-15
Identities = 153/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| || || | ||| | ||||| || || |||||||| || || | || ||| ||
Sbjct 50157 ACGGAGGACAAGATGCAAGGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCC 50216
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| || || || ||||| ||| | || | | ||||| || || ||||||||||| ||
Sbjct 50217 ATCTTCAAGCTGCTTGCCTGCAAAGATAAGGCGCTGCTGGTCAGGGGGAATACCCTCCTT 50276
Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749
|| || ||| || | || || | || | |||||||| ||| || |||||||| |
Sbjct 50277 ATCCTG-AATCTTGGCCTTAACGTTGTCGATGGTGTCAGAGGATTCGACCTCAAGAGTGA 50335
Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|||| ||||| || || || || || || || |||||
Sbjct 50336 TAGTCTTGCCGGTCAAAGTCTTGACGAAGATTTGCAT 50372
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385175786638827
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |