Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq430 120 2e-22 seq245 95.1 8e-15 >seq430 Length=15258 Score = 120 bits (132), Expect = 2e-22 Identities = 159/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| || || | || ||||| ||||| || || || |||||||| || || || ||| | Sbjct 1654 ACGCAAAACAAGGTGAAGAGTACTCTCCTTCTGAATATTGTAATCAGACAGAGTTCGTCC 1595 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || ||||| ||||| || ||||||||||| |||||||| || | || | |||||| || Sbjct 1594 ATCCTCCAACTGTTTACCAGCAAAAATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTT 1535 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| ||| || | | |||| ||| | ||||| ||||| || || | |||| Sbjct 1534 GTCCTGAATCTT-GGCCTTGACATTGTCAATCGTGTCCGAAGATTCGACTTCCAAAGTGA 1476 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || ||||| | ||| || ||||||||||||||| Sbjct 1475 TGGTCTTTCCTGTGAGCGTCTTGACAAAGATCTGCATA 1438 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | |||| || || || ||| || || |||||||| || || Sbjct 1210 ACCACCACGGAGACGGAGAACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 1151 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || ||| | || || | || |||||||| ||||| | |||||||||||| | || Sbjct 1150 AAGGGTTCGTCCATCCTCAAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCGGGAGG 1091 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||| || ||||| ||| || | | || | ||| | ||||||| || |||| Sbjct 1090 AATACCCTCCTTGTCCTGAATCTT-GGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCA 1032 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || ||||| || | || ||||| ||||||||||| Sbjct 1031 CCTCGAGGGTGATGGTCTTACCGGTCAGAGTCTTTACGAAGATCTGCAT 983 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| ||| || | || | ||| | ||| || ||||| ||||||||||| || Sbjct 1438 ACCACCTCGCAATCGCAGAACGAGATGCAACGTGGATTCCTTTTGGATGTTGTAATCCGA 1379 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || || |||| || | || ||||| ||||| || | ||||||||| || | || Sbjct 1378 GAGGGTTCGGCCGTCTTCGAGCTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCAGGGGG 1319 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| || || || || | | ||||| ||| | ||||| || || | Sbjct 1318 AATGCCTTCCTTATCCTGGATCTT-GGCCTTAACATTGTCGATAGTGTCCGAGGACTCGA 1260 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || || || || || || || || ||||||||||||||| Sbjct 1259 CTTCGAGAGTAATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCATA 1210 >seq245 Length=26962 Score = 95.1 bits (104), Expect = 8e-15 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || ||||||||||| ||||| ||||| | || || | || Sbjct 24094 TGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGACCATCTTCGAGCTGC 24035 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || |||||||| || | |||||||||||| | || | ||||| ||||| || || Sbjct 24034 TTGCCGGCAAAGATGAGACGCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTT- 23976 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 | | |||| ||| | |||||| || || || || | ||||| || ||||| || Sbjct 23975 GGCCTTGACATTGTCGATGGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTACCCGT 23916 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | ||||| |||||||||||||| Sbjct 23915 GAGGGTTTTAACAAAGATCTGCAT 23892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328666955778240