Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq97 122 8e-23 seq430 91.5 1e-13 >seq97 Length=49960 Score = 122 bits (134), Expect = 8e-23 Identities = 473/734 (64%), Gaps = 17/734 (2%) Strand=Plus/Minus Query 147685 TCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACAC 147744 ||||| |||||||| | ||||||||||| || |||||||| || || || ||||| ||| Sbjct 18540 TCGTAACGCTCGTAGAGACGCTCAAACTCCTCACCGTAGCAGTCAGCGAGACCGGGGCAC 18481 Query 147745 TGATGCGGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCC 147804 | | || ||||| |||||||| | ||| | | ||| | ||| || ||||| Sbjct 18480 TCGTTGGGGCACATGAGCGACCATTCGCCGTTCTGCTCAACCCTCTTCATGAAGAGATCG 18421 Query 147805 GGCACCCACAGCGCGTACATAAGATCGCGCGCTTTGCAATCCTCGGCGCCCATG----TT 147860 || ||||| || ||||| | || || || || | | | || || || || Sbjct 18420 GGAACCCAGAGAGCGTAGAAGAGTTCACGGGCAC-GAACTTCTTCCTTACCGTGGTTCTT 18362 Query 147861 GCGTTTCAAATTAAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAG 147920 ||| ||| | || | | ||| || | |||||| || |||||||||| ||| | Sbjct 18361 GCG---CAAGTCGAGGAACTCAAAGACATCCGAGTGCCAAGGCTCAATGTAGATGGCAAA 18305 Query 147921 CGCACCTTTACGCTTT---CCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCG 147977 ||||| |||||| || ||||||||||| | || | ||||||| || || || Sbjct 18304 GGCACCGGGACGCTTGTTACCACCCTGGTCGACGTAACGGGCGGTGTTGTTGAAGACACG 18245 Query 147978 CACCATGGGTTCCAGGCCGCTCGCAGTG-CCGTTGGTGGAATTGATCTTGCTGCCGCGGG 148036 | |||||| | | ||| | || | ||||||||| || | ||| Sbjct 18244 AAGCATGGGAACGATACCGTT-GCTGACACCGTTGGTGCCGGCAATGTACGAGCCAGTAC 18186 Query 148037 CTCGCACTTCGTGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAAT 148096 |||| | ||| | ||| | |||||||||||| || ||| || || || ||| Sbjct 18185 CTCGAATGCAGTGAATGTTCAAACCAATGCCGCCGGCGGTCTTGGAGAT--CATGGCACA 18128 Query 148097 CGCCCA-ATGTCGT-GTAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACA 148154 | | | | || ||| ||||| ||||| ||| | || | | ||| | ||||| Sbjct 18127 GGTCTTGAGGGTGTCGTAAATGCCATCGATCGAGTCATCCTTCATGGCAACAAGGAAACA 18068 Query 148155 CGAACACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAA 148214 || | | || ||| | || || || ||| ||||| || ||||| ||||| Sbjct 18067 GGACGAGAGCTGAGGATGGGGAGTGCCAGCGTTGAAGAGGGTTGGCGAGGCGTGAGTAAA 18008 Query 148215 CAATTTTTGACTCATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAAT 148274 | ||||| ||| | | || ||||| ||||| |||||||| | ||||||||| Sbjct 18007 GTACTTTTGCGACATGAGGTTGTAAGTCTCGATAGCACTCTCGATGTCCTGGCCGTGAAT 17948 Query 148275 GCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTT 148334 || | ||||| ||||||||||||||||| || || || ||||| | |||||| Sbjct 17947 ACCAACAGCGACACGCATGAGCATGTGCTGGGGACGCTCAGCAACCTTGCCGTTGATGCG 17888 Query 148335 GAGAAGATATCCATTTTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTC 148394 ||| | || | ||||| || ||| | || || | ||||| | || || |||| Sbjct 17887 GAGCAAGTAGGAACGCTCGAGAGTCTTGAAGCCGAAAAAGTTGTAGTGGAAGTCGCGCTC 17828 Query 148395 GTAAGCGATGGCCG 148408 ||| ||| |||| Sbjct 17827 GTAGATGATAGCCG 17814 >seq430 Length=15258 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||| || | | | ||||| || || ||||||||||| | ||| || ||| || Sbjct 1192 AACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTTCGTCCATCCTC 1133 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 ||||| || |||| | || |||||||| ||||| ||||| || || || || || Sbjct 1132 AAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCCTG 1073 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||| || || | | || | || |||| | |||||| |||| || | || || Sbjct 1072 AATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTT 1013 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCATGAC 132126 ||| |||||||| |||| ||| ||||||||||| Sbjct 1012 ACCGGTCAGAGTCTTTACGAAGATCTGCATGAC 980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476556109702920