Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq278 140 4e-28 >seq278 Length=24804 Score = 140 bits (154), Expect = 4e-28 Identities = 429/663 (65%), Gaps = 38/663 (6%) Strand=Plus/Plus Query 146872 ATCTTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCACG 146931 || ||||| ||||||||||| | || | | | |||||||| || || ||||| ||| Sbjct 16202 ATGTTGAGTTTGGGGAAGGGAAGTGGTTCTCGTTCGAGCTGAATCTTGAGCGGCTCTACG 16261 Query 146932 TGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCG 146991 || | ||||||||| ||||| |||| | | || | ||| |||| | Sbjct 16262 TGATCTTTGTAGACGTGAGCGTCACCCATTGAAAGAACGAGTTCCTTTGGCTCGCAATCA 16321 Query 146992 GTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCC 147051 || || | || | |||||| ||||||| | |||||| || |||||||||||||| ||| Sbjct 16322 GTGACTTTAGCGATCATGTAAGTGAGCAAAGCGTAGCTAGCAATGTTGAAGGGGACTCCC 16381 Query 147052 AGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCT--------------CCC 147097 | || | || | || | ||||||| ||| |||||||||| ||| Sbjct 16382 AATCCAAGATCGCAGGAACGTTGGTACATCTGACACGAGAGCTGCTTCCTGCCTTGACCC 16441 Query 147098 ----------CGTC------GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGC 147141 |||| || ||| | || || || | ||||| || || || || Sbjct 16442 TTGGCATATGCGTCAAGGTTGGAGACGAAGAATTGACAGAACATGTGACAAGGTGGAAGA 16501 Query 147142 GCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCG--- 147198 |||||| || || || ||||||||| || || || || |||| ||| Sbjct 16502 GCCATGAGGGAGAGATCTTTGGGGTTCCATGCGCTGAGCA--AG-ATTCTGCGATCGGTA 16558 Query 147199 GGGTTCCTCTTAATCTCTTCGATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAG 147258 ||||| |||| |||| ||||| || | || ||||| |||||||| || |||| Sbjct 16559 GGGTTGTTCTTGATCTTGTCGATGACATCGCGGAGTTGGTCGACGCCCTGACCGGTGTAG 16618 Query 147259 TTTGTCCCGCAGTCCACGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGC 147318 | || | || || ||| ||| ||||| || | ||| ||||| ||||| ||||| Sbjct 16619 TCGGTGTCACAATCTCTGTATTCGGCGCCAAAATGACGCCATTGGAAACCGTAGACTGGA 16678 Query 147319 CCCAGGTCGCCGGGCTTTCTGTGCGAGAAGCC-CGCCCGCTTGAGAAACTCGGGGGACCC 147377 |||| ||| || | |||||||| || || || | | || ||||| | || || Sbjct 16679 CCCAAGTCACCTTCCCTTCTGTGCTGCAATCCTCGAGAG-TCAAGGAACTCTCGTGAACC 16737 Query 147378 GTGGGCGTCCCAGATGCCCACTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCG 147437 || | | ||||||||| ||| || ||| | | |||| ||| ||||| || || Sbjct 16738 GTTGCCATCCCAGATGTGCACACCTTTGTCTGTGAGCAACTTGGAGTCGGTCTTTCCAGC 16797 Query 147438 GATGAACCAGAGCAGCTCCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAG 147497 | |||||||| |||||||| | ||| || | | ||||| | ||| || |||||||| Sbjct 16798 AACAAACCAGAGTAGCTCCTCGAGAACACCGCGAAAGAAGACACGCTTTGTTGTCAGCAG 16857 Query 147498 GGG 147500 || Sbjct 16858 AGG 16860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583420556080800