Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq430 105 6e-18 seq23 100 2e-16 >seq430 Length=15258 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || ||||| |||| || | ||| ||||| || || ||||| || ||||| || Sbjct 1437 CCACCTCGCAATCGCAGAACGAGATGCAACGTGGATTCCTTTTGGATGTTGTAATCCGAG 1378 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || ||||||||||||| || || || | || |||||||| || || || || Sbjct 1377 AGGGTTCGGCCGTCTTCGAGCTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCAGGGGGA 1318 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || ||||| ||||||| || | | || | |||||| | || || ||| Sbjct 1317 ATGCCTTCCTTATCCTGGATCTTGGCCTTAACATTGTCGATAGTGTCCGAGGACTCGACT 1258 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || ||||| || | ||||| |||| || || |||||||| |||||| Sbjct 1257 TCGAGAGTAATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCATA 1210 >seq23 Length=89368 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 27044 ATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTG 27103 ||| || || || || || ||||| ||||||||| | | | || | ||||| ||||| Sbjct 50169 ATGCAAGGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATCTTCAAGCTG 50228 Query 27104 TTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTT 27163 || || || | || || ||||| || || || || | |||||| ||||| ||||| Sbjct 50229 CTTGCCTGCAAAGATAAGGCGCTGCTGGTCAGGGGGAATACCCTCCTTATCCTGAATCTT 50288 Query 27164 GTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGT 27223 | || | | | || | ||||| | || ||| || || ||||| |||| ||||| || Sbjct 50289 GGCCTTAACGTTGTCGATGGTGTCAGAGGATTCGACCTCAAGAGTGATAGTCTTGCCGGT 50348 Query 27224 CAGAGTTTTCACAAAGATTTGCATA 27248 || ||| || || |||||||||||| Sbjct 50349 CAAAGTCTTGACGAAGATTTGCATA 50373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424886510822664