Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq97 237 2e-57 seq257 152 6e-32 seq544 129 7e-25 >seq97 Length=49960 Score = 237 bits (262), Expect = 2e-57 Identities = 576/862 (67%), Gaps = 13/862 (2%) Strand=Plus/Minus Query 118704 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 118763 ||||| ||||| || || || || || |||| |||||| | || ||||||| || Sbjct 18771 GGAAGAGCGATGGAGGCAAGGTTGCAAACAGCAACCTCATCGGGAGCACTGTACTCGATG 18712 Query 118764 ATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 118823 || || ||||||||||| || | ||| || || || | |||||| || || ||||| | Sbjct 18711 ATCTCAGTGCACAAGTTGGAGCACTTGATAGTACCGAGGTTCTTCTGGTTGGACTTGCGG 18652 Query 118824 TTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 118883 || || |||||||| || ||| | || | || ||||| || || |||| ||| || Sbjct 18651 TTGGCAGCGTCCTTGTAGAGGATGAAGGGGTTACCAGTCTCGGTCTGCGACTCGAGGATG 18592 Query 118884 GCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTT 118942 || | ||||| | || | ||| || ||| |||| || || || ||||||| Sbjct 18591 GCGTACCAGAGCTTCTG-AGCCTTGACGGTGCGCTTGGAACGACCTTCAGCCTCGTAACG 18533 Query 118943 TGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGG 119002 |||||| |||||||| ||||| | || | ||| || || || | || Sbjct 18532 CTCGTAGAGACGCTCAAACTCCTCACCGTAGCAGTCAGCGAGACCGGGGCACTCGTTGGG 18473 Query 119003 GCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCA 119062 ||| | ||| ||||||| || || |||||||| |||||||||||| || || | ||| Sbjct 18472 GCACATGAGCGACCATTCGCCGTTCTGCTCAACCCTCTTCATGAAGAGATCGGGAACCCA 18413 Query 119063 GAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTC 119122 ||| || ||||||| || || ||| ||||||| | || || || ||||| || Sbjct 18412 GAGAGCGTAGAAGAGTTCACGGGCACGAACTTCTTCCTTACCGTGGTTCTTGCGCAAGTC 18353 Query 119123 CAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG 119182 | || || | || ||||| |||||| || || | ||| | || | | || ||| Sbjct 18352 GAGGAACTCAAAGACATCCGAGTGCCAAGGCTCAATGTAGATGGCAAAGGCACCGGGACG 18293 Query 119183 ---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAAT 119239 |||| |||||| || || | || ||| ||| || ||||||||||| |||| Sbjct 18292 CTTGTTACCACCCTGGTCGACGTAACGGGCGGTGTTGTTGAAGACACGAAGCATGGGAAC 18233 Query 119240 GATACCATCGGATTGGCCATTTGTCCCCCGAA--TACGAGACTTATTGGCTCTGACATCG 119297 |||||| | | || || || || || |||||| | | | ||| | | Sbjct 18232 GATACCGTTGCTGACACCGTTGGTGCCGGCAATGTACGAGCC--AGTACCTCGAATGCAG 18175 Query 119298 TGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTG 119357 || |||| || |||||| || || || ||| ||||| || || | |||| || Sbjct 18174 TGAATGTTCAAACCAATGCCGCCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTG 18115 Query 119358 CCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGA 119417 |||| || ||||||||||||||| |||| | || | ||||| ||| ||| | ||| Sbjct 18114 TCGTAAATGCCATCGATCGAGTCATCCTTCATGGCAACAAGGAAACAGGACGAGAGCTGA 18055 Query 119418 GGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATAC-CTTGGGA 119476 || ||| || |||||||||||||| ||||| | |||| || || ||| ||| || Sbjct 18054 GGATGGGGAGTGCCAGCGTTGAAGAGGGTTGGCGAGGCGT-GAGTAAAGTACTTTTGCGA 17996 Query 119477 CATCTTGTCGTAGGTCTCCA-AGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGA 119535 ||| || ||| ||||| | || | | ||||| | ||||||||||| | | || Sbjct 17995 CATGAGGTTGTAAGTCTCGATAGCACTCTCG-ATGTCCTGGCCGTGAATACCAACAGCGA 17937 Query 119536 CCCGCATAAACATGTATTGGGG 119557 | ||||| | ||||| ||||| Sbjct 17936 CACGCATGAGCATGTGCTGGGG 17915 >seq257 Length=26072 Score = 152 bits (168), Expect = 6e-32 Identities = 265/380 (70%), Gaps = 4/380 (1%) Strand=Plus/Plus Query 179733 CTTGAGGAGCGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTGTGA 179792 |||||| |||||||| |||||| || || | |||| |||||||||||| || || || Sbjct 23593 CTTGAGCAGCGATGGGTAGAAGTGGTCGAGGAAGTTGATGATGAGACCCTTGATATGCGA 23652 Query 179793 ACCATCGTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCG-AAGCTCGGAAACAT 179851 |||||||| |||| ||| ||||| ||||| | | || || || ||||| | ||| | Sbjct 23653 ACCATCGTGATCCTGATCGGTCATGATCATGATACTGCCGTATCGCAAGCT-GCTAACGT 23711 Query 179852 CTTGATAATCCTTACCTTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTTGGT 179911 | |||| | || || ||||| ||||| | |||| ||||| | |||| |||| || Sbjct 23712 CGAGATATTGTTTGCCGTGTTGCAGACCGAGAATCTCCTTGATGGCTTTGATCTCTGCGT 23771 Query 179912 TTGATGTGAGTTGCGCCACTGAAGCATCTCGGACATTTTTACACTTCCCACGGAGAGGGA 179971 | ||| || | | ||| || || || || | ||| || ||||| |||| Sbjct 23772 TCTTCATGATCTGATCGTGAGTAGCCTCACGAACGTTGAGAAGCTTACCGCGGAGCGGGA 23831 Query 179972 ACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGG 180031 | |||||||||| |||||||| || || ||||| ||||| ||||| | ||| || | Sbjct 23832 AGACACCGTAGTTGTCACGACCCACTTCAACAAGACCGGCAACAGCGAGAGCCTTGGCTG 23891 Query 180032 AATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTC-CCTGCCTTGTTC 180090 | ||||| || || | ||||| ||||| | || || | | | | ||||| ||||| Sbjct 23892 AGTCACCTTCGGTGAGAATGAGTGTACAGTCCTTAGCTT-TCCTGCCACCTGCATTGTTG 23950 Query 180091 GCGTCGTCCAACTTGGGAAT 180110 || || || | |||||| || Sbjct 23951 GCATCTTCGAGCTTGGGGAT 23970 >seq544 Length=9533 Score = 129 bits (142), Expect = 7e-25 Identities = 118/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| ||||||||||| ||||||||||| || || |||||| ||||| ||||||||||| Sbjct 3466 GTGAAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGACCGGGCATGAGACC 3525 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||||| | |||||| || | || || || ||||||||||| ||||| || Sbjct 3526 ACGCTTCTTGAGCCAGAAGATAGAGGCGAAAGAACCGGAGAAGAAGATACCCTCTACGGC 3585 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGG 130175 ||| || |||| ||||||||| ||||||| Sbjct 3586 CGCAAAGGCAACGAGACGCTCTGCAAAGG 3614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618363716621320