Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq97 293 3e-74 seq257 156 5e-33 seq544 152 6e-32 >seq97 Length=49960 Score = 293 bits (324), Expect = 3e-74 Identities = 916/1395 (66%), Gaps = 35/1395 (3%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||||| || || | |||||||| || | ||||| || || Sbjct 17915 CCCCAGCACATGCTCATGCGTGTCGCTGTTGGTATTCACGGCCAGGACATCGAGAGTGCT 17974 Query 104282 TTGGAGACATACGACAAGATGTCCCAAG-GTATGTTCATTCACGCAACACCAACCCTCTT 104340 | ||||| ||| || ||||| ||| ||| || | |||||| | ||||||||||| Sbjct 17975 ATCGAGACTTACAACCTCATGTCGCAAAAGTACTTT-ACTCACGCCTCGCCAACCCTCTT 18033 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||| ||||| || || || || | || || |||||| | |||| ||||| || Sbjct 18034 CAACGCTGGCACTCCCCATCCTCAGCTCTCGTCCTGTTTCCTTGTTGCCATGAAGGATGA 18093 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 ||| ||| | || || || | || || | | ||||| ||||| ||| || || Sbjct 18094 CTCGATCGATGGCATTTACGACACCCTCAAGACCTGTGCCATGATCTCCAAGACCGCCGG 18153 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTA--TTCGGGGGACA 104518 || ||||| || |||| || | ||| | | |||||| || || || Sbjct 18154 CGGCATTGGTTTGAACATTCACTGCATTCGAGGTACTGG--CTCGTACATTGCCGGCACC 18211 Query 104519 AATGGTCAATCAG--ATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 104576 || ||| |||| | ||||| |||| |||||||| || || ||| ||| || || | Sbjct 18212 AACGGTG--TCAGCAACGGTATCGTTCCCATGCTTCGTGTCTTCAACAACACCGCCCGTT 18269 Query 104577 ATGTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCAT 104630 | || | || | ||| ||||| || | | || |||| ||||||| | Sbjct 18270 ACGTCGACCAGGGTGGTAACAAGCGTCCC---GGTGCCTTTGCCATCTACATTGAGCCTT 18326 Query 104631 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGC 104690 ||||| ||||| || | |||||||| || ||||| ||||| ||| | || || | | Sbjct 18327 GGCACTCGGATGTCTTTGAGTTCCTCGACTTGCGCAAGAACCACGGTAAGGAAGAAGTTC 18386 Query 104691 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 104750 | ||| || ||||||| |||||||||| |||| ||||||||||||||||| |||||| Sbjct 18387 GTGCCCGTGAACTCTTCTACGCTCTCTGGGTTCCCGATCTCTTCATGAAGAGGGTTGAGC 18446 Query 104751 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGG 104810 ||| ||| | ||||| ||| | || || || || || |||||| | || | | Sbjct 18447 AGAACGGCGAATGGTCGCTCATGTGCCCCAACGAGTGCCCCGGTCTCGCTGACTGCTACG 18506 Query 104811 GTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCG-ACG 104869 ||||||||||||| || ||| ||||||| |||||||| | | ||| || Sbjct 18507 GTGAGGAGTTTGAGCGTCTCTACGAGCGTTACGAGGCTGAAGGTCGTTCCA-AGCGCACC 18565 Query 104870 GTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 104928 || | || | || | | ||| | || || ||| |||| || ||||||||||||| || Sbjct 18566 GT-CAAGGCTCAGAAGCTCTGGTACGCCATCCTCGAGTCGCAGACCGAGACTGGTAACCC 18624 Query 104929 ATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 104988 | ||| || ||||| ||||| |||| ||| || || ||||| | ||| || Sbjct 18625 CTTCATCCTCTACAAGGACGCTGCCAACCGCAAGTCCAACCAGAAGAACCTCGGTACTAT 18684 Query 104989 CAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 105048 |||| | ||||| | || || || ||| | || | | | |||||| ||||| Sbjct 18685 CAAGTGCTCCAACTTGTGCACTGAGATCATCGAGTACAGTGCTCCCGATGAGGTTGCTGT 18744 Query 105049 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGA 105108 || ||||| || || |||||||| |||| | | || || | || ||| | || Sbjct 18745 TTGCAACCTTGCCTCCATCGCTCTTCCCACCTTCATCGACCCTGTCACCAAGGTCTACGA 18804 Query 105109 TTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGA 105168 || | | ||||| ||| | || || || ||| ||| | |||| | || || Sbjct 18805 CTACAAGCGTTTGCACGAGGTTGCCAAGGCTATCTGCAAGAACTTGAACAAGATCATCGA 18864 Query 105169 TAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGG 105228 | || | ||||| |||||| |||||| ||||| ||| | ||||| || || || Sbjct 18865 CATCAACTACTACCCTGTTGAGGAGGCTCGTCGTTCTAACATGCGTCACCGCCCTATCGG 18924 Query 105229 TCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT--TCTTTGTCGCCACGCATTTGATTCC 105286 | |||||||||||||||| || |||| ||||| || | | | |||| || || || Sbjct 18925 TATCGGTGTTCAGGGTCTTGCCGATGCCTTCATGATCATGG--GTTACGCCTTCGAATCG 18982 Query 105287 GACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAG 105346 ||| || | | || | | || || |||||||| || || ||||||||||| Sbjct 18983 CCCGAGGCTCGTCGATTGAACGTCCAGATCTTCGAGACCATCTACCATGCCGCTCTTGA- 19041 Query 105347 GCGA--GTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAG 105404 |||| || | |||||||| | | | || | || || |||| | || ||||| | Sbjct 19042 GCGATCGTGC-GAGTTGGCTCAAGAGCACGGCACCTACGAGACCTACGCCGGCTCTCCTG 19100 Query 105405 CTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGC-TTCACTACGAC 105463 |||| || || | || || | || ||||||| || | || | || | ||| Sbjct 19101 CTTCCCAGGGTGAACTCCAGTACGACATGTGGG-GTGTCACTCCTTCCGATCTTTGGGAC 19159 Query 105464 TGGG-AAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGC 105522 |||| ||| ||||||| ||| || | ||||| || ||| ||| | | || Sbjct 19160 TGGGCTAGC-CTCAAGGCCAAGATCGCCAAGCACGGTCTCCGCAACTCGCTCTTGCTCGC 19218 Query 105523 TCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTA 105582 ||| ||||| || || || || || ||||||||| || ||||| || || ||||| Sbjct 19219 TCCCATGCCTACCGCATCTACAAGTCAGATCTTGGGTTTCAACGAATGTTTCGAGCCCTA 19278 Query 105583 CACGACGAACATCTA 105597 ||| | |||||||| Sbjct 19279 CACCTCCAACATCTA 19293 >seq257 Length=26072 Score = 156 bits (172), Expect = 5e-33 Identities = 266/381 (70%), Gaps = 6/381 (2%) Strand=Plus/Plus Query 169126 CTTGAGAAGACTTGGCCAGAAGTAGTGAATCATATTGAGAATGAGACCCTTGATGTGGGA 169185 |||||| || ||| |||||| || | | |||| |||||||||||||| || || Sbjct 23593 CTTGAGCAGCGATGGGTAGAAGTGGTCGAGGAAGTTGATGATGAGACCCTTGATATGCGA 23652 Query 169186 ACCGTCGTTATCGGCATCCGTCATGATCATGAGACGACCATACCG-AAGCTCGGAAACAT 169244 ||| |||| ||| ||| ||||||||||||| || || || || ||||| | ||| | Sbjct 23653 ACCATCGTGATCCTGATCGGTCATGATCATGATACTGCCGTATCGCAAGCT-GCTAACGT 23711 Query 169245 CTTGATAGTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAACTCTTGGT 169304 | |||| | || || ||||| ||||| | |||| ||||| | |||| |||| || Sbjct 23712 CGAGATATTGTTTGCCGTGTTGCAGACCGAGAATCTCCTTGATGGCTTTGATCTCTGCGT 23771 Query 169305 TTGATGTGAGCTGTGTGACAGAGGCATCGCGAACATTCTTACACTTCCCACGAAGAGGGA 169364 | ||| ||| | || || || ||||| || | ||| || || || |||| Sbjct 23772 TCTTCATGATCTGATCGTGAGTAGCCTCACGAACGTTGAGAAGCTTACCGCGGAGCGGGA 23831 Query 169365 AGACACCGTAGTGATCACGACCAACGACGGAGAGACCCGCGACTGCGAGAGTCTTCGCCG 169424 |||||||||||| |||||||| || | ||||| || || ||||||| ||| || | Sbjct 23832 AGACACCGTAGTTGTCACGACCCACTTCAACAAGACCGGCAACAGCGAGAGCCTTGGCTG 23891 Query 169425 AGTCACCCTCGGTGACGATGAGCGTACATTTTCCAGATT--GTGCCGTACCCGCCTTGTT 169482 ||||||| ||||||| ||||| ||||| | || || |||| ||| || ||||| Sbjct 23892 AGTCACCTTCGGTGAGAATGAGTGTACAGTCCTTAGCTTTCCTGCC--ACCTGCATTGTT 23949 Query 169483 CGCATCATCCAATTTGGGAAT 169503 ||||| || | ||||| || Sbjct 23950 GGCATCTTCGAGCTTGGGGAT 23970 >seq544 Length=9533 Score = 152 bits (168), Expect = 6e-32 Identities = 123/149 (83%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 94796 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 94855 ||||||| ||||| ||| | || |||||| || ||||||||||||||||| ||||| | Sbjct 3614 CCTTTGCAGAGCGTCTCGTTGCCTTTGCGGCCGTAGAGGGTATCTTCTTCTCCGGTTCTT 3555 Query 94856 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 94915 || | |||| | |||||||||||||| ||||||||||| |||||| ||||||||||| Sbjct 3554 TCGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTCACCTTCTCCAACG 3495 Query 94916 AGCTTATCTCTCGTGACGAGGGACTCCAC 94944 |||| ||||| || |||||||| || ||| Sbjct 3494 AGCTCATCTCCCGCGACGAGGGTCTTCAC 3466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583193382342280