Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq15 197 4e-45 seq430 170 6e-37 seq23 149 2e-30 seq245 145 2e-29 seq29 89.7 2e-12 >seq15 Length=102925 Score = 197 bits (218), Expect = 4e-45 Identities = 589/901 (65%), Gaps = 7/901 (1%) Strand=Plus/Plus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 || || || |||||| | |||||||| || || ||||| || || ||||||||||| ||| Sbjct 87573 GCCATCGGTATCGATCTTGGTACTACCTACTCCTGTGTCGCCGTCTGGCAAAATGACCGT 87632 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || || | ||||| || ||||| |||||| | || || || ||||| || || || || Sbjct 87633 GTCGAGGTCATTGCCAACGATCAGGGTAACCGCACCACCCCCTCATATGTCGCCTTCACT 87692 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || | |||||| | || || ||| |||| || || || | || ||||| | || Sbjct 87693 GACTCGGAGCGTCTCATCGGAGATGCTGCCAAGAACCAGGTCGCCATGAATCCTCATAAC 87752 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGACAAATCTACACAATC 349437 || || || ||||||||||| |||||||| | ||||| | ||| || || Sbjct 87753 ACTGTCTTCGATGCTAAGCGTCTTATTGGCCGCAAGTTCGAC-GACCCCGAGGTTCAGTC 87811 Query 349438 TGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGA 349497 || | || || | ||||| || || ||| | ||| | || || || Sbjct 87812 CGACATGAAGCACTGGCCTTTCGAGGTCGT--CAACAC-CGGCGGCAAGCCCCAGATCCG 87868 Query 349498 GGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTT 349557 | || || || ||||| | || || |||||||| || || || |||||| | Sbjct 87869 CATCGAGTACAAGGGTGAGAAGAAGACCTTCACCCCCGAAGAGATCTCTTCCATGGTTCT 87928 Query 349558 AGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTAT 349617 | || ||| || | || || || || | |||| || || | ||||| || | Sbjct 87929 CCTCAAGATGCGTGAGACCGCCGAGGCCTACCTCGGTGGCACCGTCAAGGATGCCGTCGT 87988 Query 349618 TACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCAT 349677 || || || || || || || ||| | |||||| || || || ||||| || | ||| Sbjct 87989 CACCGTCCCCGCTTACTTCAACGATTCTCAGCGTCAGGCTACCAAGGATGCCGGTATCAT 88048 Query 349678 TGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGG 349737 | |||| | || ||| | | || || || || ||||||||||| || || || || || Sbjct 88049 TTCGGGTCTCAACGTTATGCGTATCATCAACGAGCCCACTGCTGCCGCCATCGCTTACGG 88108 Query 349738 GCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTAC 349797 || || || | | || ||||| || | || || || ||| | || || ||||| Sbjct 88109 TCTCGACAAGAAGGCCGAGGGCGAAAAGAACGTCCTCATCTTCGATCTCGGAGGAGGTAC 88168 Query 349798 TTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGG 349857 || ||||| || || || ||| | || ||||| || || || || || || || ||||| Sbjct 88169 CTTCGATGTTTCGCTCCTTACAATCGAGGAGGGTATCTTCGAGGTCAAGGCCACCGCTGG 88228 Query 349858 TGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGA 349917 ||| || || ||||| || || || || || || || ||||| || ||||| | || Sbjct 88229 TGACACCCACCTTGGCGGTGAGGACTTCGACAACCGCCTCGTCAACCACTTTGTCCAGGA 88288 Query 349918 ATTTAAGCGTCAAGCTAAAATTGATATTGGAGA-TAATCCTAGAGCAATGCGTCGCCTAA 349976 || ||||| |||| || | ||| | || || | || | ||||| || Sbjct 88289 GTTCAAGCG-CAAGAACAAGAAGGACTTGACCACCAACGCTCGTGCTCTCCGTCGTCTCC 88347 Query 349977 GAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAA 350036 | || || ||||| ||||||||||| | | || || || |||| ||| | || || | Sbjct 88348 GCACCGCCTGTGAGCGTGCTAAGCGCACTCTCTCTTCGGCTGCCCAGACCACCATCGAGA 88407 Query 350037 TTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAG 350096 | || || || || || | || |||| | || || || ||||| || || || | Sbjct 88408 TCGACTCGCTCTTCGAGGGTATCGACTTCTACACCTCCATCACCCGTGCCCGTTTCGAGG 88467 Query 350097 A 350097 | Sbjct 88468 A 88468 >seq430 Length=15258 Score = 170 bits (188), Expect = 6e-37 Identities = 178/234 (76%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 140504 TTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATA 140563 ||| | ||| ||||| | | | |||||| ||||||||| ||| || |||||||| || Sbjct 1672 TTAGAGACCGCCACGAAGACGCAAAACAAGGTGAAGAGTACTCTCCTTCTGAATATTGTA 1613 Query 140564 ATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATC 140623 |||||| | ||||| ||||| || | ||||| |||||||| || | || ||||| || Sbjct 1612 ATCAGACAGAGTTCGTCCATCCTCCAACTGTTTACCAGCAAAAATCAATCGCTGCTGGTC 1553 Query 140624 AGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG 140683 ||||||||| ||||| || |||||||| || || || ||||| ||||||| || || | Sbjct 1552 AGGAGGAATACCTTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATCGTGTCCGAAGA 1493 Query 140684 TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| ||||| | || | |||||||| || || || || ||||| |||||||| Sbjct 1492 TTCGACTTCCAAAGTGATGGTCTTTCCTGTGAGCGTCTTGACAAAGATCTGCAT 1439 Score = 168 bits (186), Expect = 2e-36 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || |||| ||||| ||||| | || || || ||||| || || ||||| Sbjct 1441 CATACCACCTCGCAATCGCAGAACGAGATGCAACGTGGATTCCTTTTGGATGTTGTAATC 1382 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| || ||||| || || |||||||||||||| ||||| ||||| ||||| Sbjct 1381 CGAGAGGGTTCGGCCGTCTTCGAGCTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCAGG 1322 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| ||||| |||||||| || || || || ||||| || || | || || | || Sbjct 1321 GGGAATGCCTTCCTTATCCTGGATCTTGGCCTTAACATTGTCGATAGTGTCCGAGGACTC 1262 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || |||| ||||| ||||| | || || ||||| |||||||| Sbjct 1261 GACTTCGAGAGTAATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 1211 Score = 141 bits (156), Expect = 3e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| || || || || ||||| || || || || || || Sbjct 1213 CATACCACCACGGAGACGGAGAACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTC 1154 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| ||||| ||||| || ||||| || || || ||||| |||||||| || Sbjct 1153 CGAAAGGGTTCGTCCATCCTCAAGCTGCTTTCCGGCGAAAATGAGACGCTGCTGATCGGG 1094 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || |||||||| || || || || || || || | || || | || Sbjct 1093 AGGAATACCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTC 1034 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| ||||| || || ||||| || |||||||| Sbjct 1033 CACCTCGAGGGTGATGGTCTTACCGGTCAGAGTCTTTACGAAGATCTGCAT 983 >seq23 Length=89368 Score = 149 bits (164), Expect = 2e-30 Identities = 174/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | |||||||| || ||||| |||||||| || || || | Sbjct 50366 TTTGCATACCACCACGGAGGCGGAGAACAAGGTGGAGAGTGGACTCTTTCTGGATGTTGT 50425 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || ||||| || || || || ||||| ||||| || || ||||||| Sbjct 50426 AGTCCGAGAGAGTGCGGCCATCCTCGAGCTGCTTACCAGCGAAGATGAGTCGCTGCTGAT 50485 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||| || || ||||| || ||||| || || || || || || ||||| | || || | Sbjct 50486 CAGGTGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGG 50545 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || | ||||| ||||| || || || ||||| |||||||| Sbjct 50546 ACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 50600 Score = 136 bits (150), Expect = 1e-26 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||| ||||| | | || |||||||| | || ||||| || ||||| || || || || Sbjct 50145 ACCGCCACGAAGACGGAGGACAAGATGCAAGGTGGACTCCTTCTGAATGTTGTAGTCGGA 50204 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || ||||||||||| || || || |||||||| || || ||||| ||||| || Sbjct 50205 AAGGGTACGGCCATCTTCAAGCTGCTTGCCTGCAAAGATAAGGCGCTGCTGGTCAGGGGG 50264 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||| || || ||||||||||| || || || || || || || | ||||| | ||| || Sbjct 50265 AATACCCTCCTTATCCTGAATCTTGGCCTTAACGTTGTCGATGGTGTCAGAGGATTCGAC 50324 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | ||||| ||||| | || || || || || ||||| Sbjct 50325 CTCAAGAGTGATAGTCTTGCCGGTCAAAGTCTTGACGAAGATTTGCAT 50372 >seq245 Length=26962 Score = 145 bits (160), Expect = 2e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || || ||||| || ||||| || || || || ||||| || Sbjct 24119 ACCACCACGAAGGCGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGA 24060 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || |||||||| || || || || |||||||| ||||| ||||||||||| || Sbjct 24059 GAGGGTGCGACCATCTTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCAGGGGG 24000 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||| ||||| || ||||| || || || || ||||| || || | || || | || || Sbjct 23999 AATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCGAC 23940 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | ||||| || || || ||||| ||||| |||||||| Sbjct 23939 CTCGAGGGTGATGGTCTTACCCGTGAGGGTTTTAACAAAGATCTGCAT 23892 >seq29 Length=80376 Score = 89.7 bits (98), Expect = 2e-12 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567 ||||||||||| | | || || || || || |||||||| || || || || || || Sbjct 49834 ATACCACCACGGAGACGGAGGACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCC 49893 Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627 || | || || || || || || || || || || ||||| ||||| ||||| || || Sbjct 49894 GAGAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATGAGACGCTGCTGGTCGGGG 49953 Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687 || || || || || ||||| || || || || || || || || | || || | || Sbjct 49954 GGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAAGACTCC 50013 Query 140688 ACTTCAAGTGTAACTGTCTTTCCGGTT 140714 || ||||| || | ||||| || ||| Sbjct 50014 ACCTCAAGGGTGATGGTCTTACCTGTT 50040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515074876920341